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IMGVR_UViG_3300017931_000280-3300017931-Ga0187877_10082259

Arc-Vir

IMGVR_UViG_3300017931_000280-3300017931-Ga0187877_10082259

Quality

60.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-82
PDB
Domain cluster: representative
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4k0dA00 1.20.120.1730 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.85 68.0 5.50e-01 84.8% 58.0%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.84 66.0 4.93e-01 82.3% 42.7%
2gomA00 1.10.10.1270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV 0.82 60.0 6.71e-01 89.9% 100.0%
2cwoA01 1.20.58.1200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RNA silencing suppressor P21, N-terminal domain 0.81 63.0 6.48e-01 82.3% 100.0%
2oduA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 69.0 6.25e-01 93.7% 96.2%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.80 64.0 5.63e-01 86.1% 68.1%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.80 65.0 6.52e-01 86.1% 93.7%
3ieeA02 1.20.58.820 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Uncharacterised protein PF12889, C-terminal DUF3829 0.79 66.0 6.01e-01 89.9% 83.5%
2l3lA01 1.20.58.1250 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain 0.79 64.0 5.82e-01 87.3% 70.8%
4jgiA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.78 58.0 5.78e-01 77.2% 88.7%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.78 66.0 6.73e-01 93.7% 98.7%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.77 61.0 6.30e-01 84.8% 100.0%
7powA01 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.76 68.0 5.05e-01 98.7% 64.1%
1sumB02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.76 68.0 5.92e-01 98.7% 93.2%
3oxfA05 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.76 57.0 5.84e-01 84.8% 84.0%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.75 59.0 5.33e-01 86.1% 70.0%
5o5jT00 1.20.58.110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 0.75 57.0 5.66e-01 83.5% 78.8%
3rkgA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.75 63.0 4.97e-01 93.7% 73.8%
3n2oA03 1.20.58.930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 60.0 5.67e-01 88.6% 82.3%
3nzpB03 1.20.58.930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 56.0 5.69e-01 81.0% 84.8%
1quuA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 65.0 5.60e-01 98.7% 83.3%
2uubT00 1.20.58.110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 0.74 62.0 5.76e-01 92.4% 75.8%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 56.0 5.15e-01 81.0% 84.2%
3lpzA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.73 56.0 3.74e-01 86.1% 21.5%
3fhnA01 6.10.280.210 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain A 0.72 64.0 4.89e-01 98.7% 48.9%
4dlqA02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.72 61.0 5.82e-01 94.9% 87.4%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.72 60.0 5.85e-01 91.1% 91.8%
4dloB02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.71 61.0 5.40e-01 94.9% 64.1%
1x8zB00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.71 61.0 4.97e-01 94.9% 57.1%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.71 53.0 5.12e-01 78.5% 92.0%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 49.0 5.01e-01 72.2% 74.0%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.71 56.0 4.42e-01 83.5% 50.0%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.70 56.0 5.20e-01 89.9% 94.2%
1ldjA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.69 49.0 4.35e-01 74.7% 70.4%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.69 60.0 5.56e-01 97.5% 98.0%
7tj9A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.69 49.0 4.46e-01 74.7% 85.8%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.69 48.0 3.73e-01 74.7% 57.4%
1a7eA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.68 56.0 4.88e-01 88.6% 63.6%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.68 47.0 4.47e-01 73.4% 95.8%
2e9xD01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 58.0 4.90e-01 97.5% 97.1%
3kfwX03 1.20.58.1460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 54.0 5.48e-01 86.1% 92.1%
2jbyA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.67 55.0 4.69e-01 97.5% 55.9%
3bvoA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.67 53.0 5.22e-01 87.3% 89.5%
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.67 44.0 4.03e-01 72.2% 51.4%
2oc5A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.66 58.0 4.29e-01 100.0% 94.4%
2jpnA00 1.20.1280.210 Mainly Alpha › Up-down Bundle › Monooxygenase › Uncharacterised protein UvsW.1 0.66 57.0 5.78e-01 97.5% 94.9%
3rfyA02 1.20.120.290 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle 0.66 51.0 4.64e-01 84.8% 77.6%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.66 45.0 4.38e-01 70.9% 65.5%
1fpoC02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.65 52.0 4.98e-01 87.3% 91.2%
2vm6A00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.64 56.0 4.67e-01 100.0% 63.2%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 45.0 4.48e-01 73.4% 72.8%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.63 51.0 5.11e-01 89.9% 95.2%
3wd6A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 47.0 4.20e-01 82.3% 68.6%
2wzkA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.62 47.0 4.31e-01 83.5% 83.6%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.61 45.0 4.53e-01 78.5% 89.7%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.61 53.0 4.35e-01 98.7% 90.0%
2gtvX00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.59 47.0 4.32e-01 87.3% 84.6%
2wwxB00 1.20.1260.70 Mainly Alpha › Up-down Bundle › Ferritin › 0.59 50.0 3.86e-01 100.0% 81.0%
4bpxD00 1.20.930.80 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.58 46.0 3.41e-01 86.1% 63.4%
3vkgA09 1.20.920.30 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.50 39.0 3.27e-01 86.1% 50.0%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3599860 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.86 72.0 6.64e-01 89.9% 99.0%
5018387 604.18.1.0 alpha bundles › Spectrin repeat-like › Triple-helical domain in regulatory ATPase variant A (RavA) › Triple-helical domain in regulatory ATPase variant A (RavA) 0.85 64.0 5.73e-01 78.5% 96.2%
3364093 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.84 65.0 7.14e-01 84.8% 98.5%
3925268 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.83 72.0 6.65e-01 93.7% 87.0%
3276672 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.83 75.0 6.23e-01 97.5% 86.2%
3488292 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.83 71.0 6.28e-01 92.4% 95.5%
5071225 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.82 63.0 5.57e-01 82.3% 57.4%
3884665 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.82 67.0 5.47e-01 87.3% 60.7%
3479953 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.81 66.0 6.49e-01 87.3% 92.9%
5040466 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.80 64.0 6.62e-01 84.8% 100.0%
3266118 603.1.1.100 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27017 0.80 73.0 6.18e-01 98.7% 84.0%
1713219 601.4.1.5 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › HBM 0.79 68.0 6.00e-01 93.7% 75.2%
3575069 603.1.1.117 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Use1 0.77 63.0 6.50e-01 87.3% 98.7%
3358888 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.77 67.0 5.99e-01 94.9% 73.6%
3171345 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.77 68.0 5.15e-01 97.5% 80.0%
1720178 1026.1.1.1 alpha bundles › Rev protein › Rev protein › Rev protein › Borrelia_REV 0.76 68.0 5.66e-01 100.0% 94.2%
3592177 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.75 56.0 5.91e-01 79.7% 100.0%
3992675 109.4.1.313 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20_N 0.75 63.0 4.37e-01 91.1% 74.0%
3917447 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.75 65.0 5.35e-01 94.9% 62.1%
3615307 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.74 57.0 5.37e-01 82.3% 80.0%
3602498 604.17.1.1 alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like › DUF447_C 0.74 51.0 5.62e-01 70.9% 100.0%
4567957 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.74 64.0 5.62e-01 94.9% 90.4%
3250233 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.74 62.0 4.76e-01 93.7% 49.7%
4426218 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 65.0 3.92e-01 100.0% 32.6%
3172910 603.1.1.99 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 0.73 59.0 5.39e-01 88.6% 92.4%
3717798 109.4.1.628 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HUS 0.73 61.0 3.62e-01 92.4% 19.1%
4036522 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.72 57.0 5.48e-01 86.1% 78.9%
4001318 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.72 54.0 5.53e-01 81.0% 100.0%
3648998 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.72 63.0 6.10e-01 100.0% 96.7%
3221764 603.2.1.0 alpha bundles › STAT-like › STAT › STAT 0.72 62.0 6.23e-01 96.2% 98.8%
3863657 192.29.1.26 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › BAG6 0.72 50.0 4.41e-01 96.2% 50.4%
5071514 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.71 57.0 5.86e-01 88.6% 100.0%
3616671 604.1.1.155 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF29142 0.71 60.0 5.72e-01 94.9% 86.3%
3940690 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 55.0 4.99e-01 82.3% 87.6%
3612915 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.71 60.0 5.48e-01 94.9% 98.1%
4940427 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.71 57.0 5.82e-01 86.1% 98.7%
4056285 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.70 58.0 5.54e-01 93.7% 78.9%
5052887 604.4.1.0 alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP 0.67 53.0 5.30e-01 84.8% 95.0%
4277373 4994.1.1.1 alpha duplicates or obligate multimers › EF2458-like › EF2458-like › EF2458-like › DUF1507 0.67 53.0 5.11e-01 88.6% 91.4%
5035499 604.9.1.0 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 0.66 49.0 5.07e-01 82.3% 85.3%
3664940 192.4.1.22 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › PF26575 0.65 50.0 5.00e-01 82.3% 88.7%
5079947 4323.1.1.0 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C 0.65 45.0 3.82e-01 73.4% 45.9%
3927129 188.1.1.0 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain 0.64 44.0 3.47e-01 72.2% 35.3%
3270838 3184.1.1.1 alpha bundles › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › CSTF2_hinge 0.60 41.0 4.29e-01 72.2% 78.6%
3920864 621.1.1.0 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.59 47.0 3.98e-01 89.9% 55.2%
3933574 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.59 48.0 3.97e-01 93.7% 90.3%
3866195 3736.1.1.2 alpha superhelices › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4_HD 0.58 49.0 3.88e-01 96.2% 57.1%
4577554 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.56 42.0 3.99e-01 82.3% 78.9%
3204604 6155.1.1.4 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC 0.54 41.0 4.25e-01 87.3% 96.0%