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IMGVR_UViG_3300017935_000178-3300017935-Ga0187848_100058504

Arc-Vir

IMGVR_UViG_3300017935_000178-3300017935-Ga0187848_100058504

Identity

Kingdom:
archaea

Quality

93.0 mean pLDDT

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 78-167
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14367.13 best DUF4411 45.2 1.30e-11 100.0% 43.8%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3do6A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 44.0 3.03e-01 75.6% 34.2%
4lw8A02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.58 37.0 3.85e-01 93.3% 68.2%
3nqwA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.58 49.0 4.01e-01 95.6% 86.5%
2c9oA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 48.0 3.76e-01 95.6% 86.0%
4xcgA02 3.30.260.10 Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain 0.56 45.0 4.17e-01 85.6% 88.5%
3nb0D01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.56 48.0 3.42e-01 100.0% 56.2%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 43.0 4.03e-01 84.4% 75.9%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 43.0 4.27e-01 86.7% 90.4%
4rhiA00 3.40.800.10 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain 0.54 47.0 3.26e-01 98.9% 66.8%
5unlB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 46.0 3.41e-01 100.0% 65.6%
5l3sB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 36.0 2.84e-01 70.0% 69.0%
1l8qA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 43.0 3.55e-01 88.9% 88.5%
1qhhA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 46.0 3.80e-01 97.8% 57.9%
4nimA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 46.0 3.45e-01 100.0% 59.6%
3ucxA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 45.0 3.35e-01 100.0% 67.1%
1j0aA01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 42.0 3.26e-01 93.3% 86.4%
1nyaA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 39.0 3.25e-01 84.4% 79.5%
5tt0B00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 44.0 3.30e-01 100.0% 62.2%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3954513 2006.1.4.16 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF4411 0.88 75.0 6.07e-01 100.0% 52.3%
4020211 7590.1.1.0 ↗ a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs 0.56 39.0 3.34e-01 72.2% 53.8%
1276701 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.55 43.0 3.83e-01 84.4% 65.4%
3784461 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.55 48.0 3.32e-01 100.0% 55.2%
3549313 101.1.10.17 ↗ alpha arrays › HTH › HTH › Cyclin-like › CycT2-like_C 0.55 44.0 3.80e-01 85.6% 63.7%
4114495 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.54 43.0 3.30e-01 86.7% 90.0%
5048677 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.53 47.0 4.11e-01 95.6% 70.8%
3670887 2003.1.6.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin 0.53 47.0 4.10e-01 100.0% 91.4%
4991488 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.53 36.0 3.02e-01 83.3% 38.8%
4944227 838.1.1.1 ↗ a+b two layers › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal_S19 0.52 41.0 3.64e-01 83.3% 60.8%
4969772 2007.1.11.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › L-fucose isomerase, N-terminal and second domains 0.52 45.0 3.88e-01 98.9% 61.4%
5044528 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.51 40.0 3.15e-01 86.7% 90.0%
3227998 2003.4.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.51 38.0 3.23e-01 81.1% 75.6%
4653568 2003.1.5.79 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.51 45.0 3.53e-01 100.0% 56.5%
5048912 7550.1.1.0 ↗ a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain 0.51 36.0 3.38e-01 80.0% 57.5%