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IMGVR_UViG_3300017935_000178-3300017935-Ga0187848_100058507

Arc-Vir

IMGVR_UViG_3300017935_000178-3300017935-Ga0187848_100058507

Quality

77.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-77
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lshA02 1.25.10.20 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Vitellinogen, superhelical 0.72 64.0 4.18e-01 100.0% 43.0%
7ep1B01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.72 65.0 4.53e-01 100.0% 76.0%
3gs3A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.71 60.0 4.15e-01 92.2% 41.0%
1iurA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.70 47.0 5.08e-01 70.1% 100.0%
2w3cA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.70 61.0 4.11e-01 93.5% 44.9%
2x1dA02 1.10.10.2120 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.68 38.0 3.94e-01 97.4% 56.8%
2wzkA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.68 59.0 5.31e-01 98.7% 90.0%
4gltA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 53.0 4.67e-01 88.3% 86.8%
3u3iA02 1.20.58.1110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 55.0 4.99e-01 94.8% 94.4%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.64 45.0 4.33e-01 72.7% 93.1%
2qsbA00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.64 48.0 4.68e-01 79.2% 81.2%
1zbtA01 6.10.140.1950 Special › Helix non-globular › Helix Hairpins › 0.64 38.0 3.76e-01 98.7% 54.2%
1c5aA00 1.20.91.20 Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system) 0.63 42.0 4.51e-01 71.4% 81.5%
7ep3A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.63 55.0 3.97e-01 100.0% 69.9%
2xppA00 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.63 54.0 4.49e-01 94.8% 89.8%
3nvoB02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.63 51.0 4.44e-01 88.3% 85.3%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 51.0 4.60e-01 89.6% 77.4%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.62 45.0 4.28e-01 76.6% 90.2%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 51.0 4.37e-01 92.2% 86.7%
1f2eA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 52.0 4.70e-01 93.5% 76.4%
4gouA03 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.62 55.0 4.09e-01 100.0% 98.0%
2pusA04 6.10.140.300 Special › Helix non-globular › Helix Hairpins › 0.61 46.0 4.15e-01 81.8% 70.4%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 48.0 4.90e-01 84.4% 98.6%
1oaoC01 1.10.8.190 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Carbon monoxide dehydrogenase alpha subunit. Chain M, domain 1 0.61 45.0 3.94e-01 79.2% 100.0%
3akjA02 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.61 51.0 3.88e-01 97.4% 78.1%
1te2A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 34.0 3.59e-01 94.8% 59.7%
2gnoA03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.61 44.0 4.12e-01 79.2% 100.0%
3fseB02 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.60 51.0 4.10e-01 90.9% 91.0%
2oocB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.60 46.0 4.10e-01 83.1% 59.0%
3swhA01 1.10.357.50 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.59 50.0 4.06e-01 100.0% 78.2%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.59 47.0 4.29e-01 88.3% 86.8%
1lk3A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.59 41.0 3.43e-01 72.7% 80.9%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.59 40.0 3.67e-01 70.1% 98.0%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.58 49.0 4.33e-01 92.2% 85.5%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.56 46.0 4.35e-01 89.6% 88.2%
4dxwA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 43.0 3.78e-01 87.0% 60.7%
4p9tA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.52 44.0 3.84e-01 94.8% 64.2%
3gi7A00 1.20.1270.180 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.51 36.0 3.27e-01 100.0% 54.4%
3purA03 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 45.0 4.03e-01 100.0% 97.3%
4d0nB01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.51 42.0 3.04e-01 93.5% 59.2%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4162588 109.4.1.1276 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAT, HEAT_ATR 0.80 67.0 4.80e-01 90.9% 33.7%
3782991 109.4.1.934 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_ATR 0.80 65.0 4.66e-01 88.3% 32.7%
4426080 109.4.1.934 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_ATR 0.79 66.0 5.84e-01 94.8% 63.6%
5058733 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.78 67.0 4.95e-01 92.2% 55.7%
5061970 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.78 66.0 4.90e-01 90.9% 53.0%
3832730 109.4.1.54 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N,Cse1 0.78 70.0 4.12e-01 98.7% 13.9%
3705131 109.4.1.1276 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAT, HEAT_ATR 0.77 63.0 4.33e-01 90.9% 26.5%
3166808 109.4.1.1276 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAT, HEAT_ATR 0.76 63.0 4.16e-01 90.9% 33.0%
3579612 109.4.1.583 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi 0.76 65.0 4.79e-01 93.5% 37.9%
3207860 109.4.1.70 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.75 65.0 5.02e-01 97.4% 46.9%
3582775 109.4.1.46 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N 0.75 63.0 4.16e-01 93.5% 23.3%
3370375 109.4.1.2953 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, Cse1, HEAT_IPO9_c, TPR_IPO11 0.74 64.0 3.56e-01 96.1% 7.4%
4001400 109.4.1.46 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N 0.74 64.0 3.96e-01 96.1% 17.0%
3166887 109.4.1.46 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N 0.74 64.0 4.00e-01 97.4% 27.6%
3217545 109.27.1.0 alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.74 59.0 5.89e-01 97.4% 83.7%
3227606 109.4.1.19 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vitellogenin_N 0.74 66.0 4.23e-01 100.0% 41.9%
4022819 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.74 65.0 5.00e-01 97.4% 58.8%
3635652 109.4.1.1276 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAT, HEAT_ATR 0.74 61.0 4.11e-01 92.2% 24.6%
3981539 532.2.1.1 alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ 0.74 64.0 6.40e-01 98.7% 92.5%
3357358 109.4.1.46 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N 0.74 64.0 4.07e-01 96.1% 19.7%
3204880 109.4.1.934 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_ATR 0.73 63.0 5.34e-01 94.8% 64.8%
3391469 109.4.1.934 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_ATR 0.73 61.0 5.58e-01 94.8% 70.0%
3258682 109.4.1.46 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N 0.73 64.0 4.08e-01 97.4% 20.3%
3870757 109.4.1.934 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_ATR 0.72 60.0 5.47e-01 93.5% 67.6%
4967952 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.72 56.0 3.96e-01 89.6% 27.1%
4438700 622.1.1.0 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain 0.72 53.0 5.18e-01 79.2% 97.6%
4016598 109.4.1.46 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N 0.72 61.0 3.90e-01 94.8% 19.0%
3496190 109.4.1.42 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CAS_CSE1,IBN_N,Cse1 0.72 64.0 3.55e-01 100.0% 7.6%
4536407 109.4.1.1276 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAT, HEAT_ATR 0.71 61.0 4.37e-01 96.1% 32.4%
3795185 109.59.1.0 alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain 0.71 56.0 5.17e-01 98.7% 66.0%
4221333 109.4.1.1283 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_PBS, HEAT_2 0.71 61.0 4.55e-01 96.1% 53.3%
4678690 4048.1.1.0 alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases 0.69 54.0 5.34e-01 84.4% 86.3%
4975404 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.69 49.0 4.31e-01 75.3% 76.5%
3275932 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 63.0 4.06e-01 100.0% 23.0%
3750653 109.4.1.300 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ZER1-like_2nd 0.68 58.0 3.32e-01 93.5% 10.5%
3564062 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 58.0 3.32e-01 93.5% 10.7%
3415759 622.1.1.1 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.67 49.0 4.74e-01 76.6% 91.8%
3282857 1075.3.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.67 51.0 3.55e-01 81.8% 76.9%
3248284 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.66 55.0 4.94e-01 89.6% 86.7%
3801261 109.4.1.256 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Insc_C 0.66 58.0 3.53e-01 97.4% 25.1%
4058363 611.3.1.8 alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Arm 0.66 55.0 4.91e-01 92.2% 73.6%
4890285 109.4.1.1283 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_PBS, HEAT_2 0.66 47.0 4.92e-01 89.6% 83.1%
3915061 109.27.1.1 alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BACK 0.65 56.0 4.63e-01 93.5% 53.3%
3843753 109.4.1.300 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ZER1-like_2nd 0.64 56.0 3.52e-01 100.0% 52.8%
3429544 109.52.1.1 alpha superhelices › Repetitive alpha hairpins › FRIGIDA flowering-time regulator › FRIGIDA flowering-time regulator › Frigida 0.64 58.0 3.88e-01 98.7% 36.8%
3452624 2008.6.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.64 56.0 3.92e-01 100.0% 40.4%
4943027 7064.1.1.1 alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.63 45.0 3.65e-01 76.6% 95.5%
3924740 622.1.1.1 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.63 47.0 4.53e-01 77.9% 91.8%
3416447 109.4.1.19 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vitellogenin_N 0.63 54.0 3.43e-01 98.7% 33.4%
4344916 109.4.1.1498 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ATP13, PF30078 0.62 55.0 3.43e-01 100.0% 18.2%
3240456 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.62 48.0 4.70e-01 84.4% 100.0%
4932047 4048.1.1.1 alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel 0.61 45.0 4.31e-01 79.2% 67.8%
4044006 150.1.2.10 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › AurF 0.60 52.0 3.47e-01 100.0% 83.0%
3232649 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.60 51.0 4.64e-01 92.2% 90.0%
3568603 11.1.1.812 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TM7S3_TM198 0.58 41.0 2.97e-01 75.3% 88.9%
2507077 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 47.0 3.72e-01 94.8% 81.6%
5045324 5082.1.1.1 alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.57 47.0 3.59e-01 96.1% 72.0%
4999330 604.12.1.135 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Oxidored_q2 0.56 42.0 3.94e-01 83.1% 87.0%
3269220 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.55 46.0 3.24e-01 90.9% 79.6%
3920021 4156.1.1.2 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C 0.52 38.0 2.80e-01 81.8% 27.1%
3332710 4156.1.1.2 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C 0.51 37.0 2.74e-01 81.8% 27.1%