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IMGVR_UViG_3300017938_000127-3300017938-Ga0187854_100013018
Arc-VirIMGVR_UViG_3300017938_000127-3300017938-Ga0187854_100013018
Identity
- Kingdom:
- archaea
Quality
49.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 459-489
D2
medium
residues 640-741
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4h33A00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 36.0 | 3.85e-01 | 78.4% | 60.4% |
| 1i5nB00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.62 | 47.0 | 4.43e-01 | 100.0% | 66.9% |
| 1i6zA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.62 | 35.0 | 3.17e-01 | 100.0% | 43.0% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.61 | 36.0 | 3.49e-01 | 100.0% | 52.1% |
| 7m2wE01 | 1.20.120.1900 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain | 0.61 | 44.0 | 3.17e-01 | 76.5% | 52.9% |
| 2b0hA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.59 | 54.0 | 5.00e-01 | 99.0% | 90.6% |
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.59 | 52.0 | 4.83e-01 | 100.0% | 90.3% |
| 4w8pA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.59 | 53.0 | 4.91e-01 | 100.0% | 90.0% |
| 1orjD00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.58 | 49.0 | 4.65e-01 | 100.0% | 77.6% |
| 6s8bA01 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.58 | 46.0 | 4.17e-01 | 95.1% | 61.2% |
| 6xz3A01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.57 | 52.0 | 4.99e-01 | 99.0% | 90.6% |
| 3u9jA00 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.56 | 50.0 | 4.37e-01 | 100.0% | 84.7% |
| 2np5D00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 48.0 | 4.22e-01 | 98.0% | 77.8% |
| 6pe0E01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.56 | 26.0 | 3.62e-01 | 90.2% | 88.7% |
| 2bnlC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 40.0 | 3.66e-01 | 80.4% | 56.7% |
| 2etdA00 | 1.20.1440.20 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain | 0.55 | 39.0 | 3.52e-01 | 90.2% | 52.5% |
| 4l22A02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.55 | 42.0 | 2.95e-01 | 80.4% | 97.6% |
| 1br0A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 40.0 | 3.78e-01 | 74.5% | 81.7% |
| 2ogiB00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.54 | 39.0 | 3.25e-01 | 76.5% | 96.4% |
| 4bemJ00 | 1.20.120.610 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase | 0.54 | 40.0 | 3.35e-01 | 78.4% | 67.4% |
| 2mgyA01 | 1.20.1260.100 | Mainly Alpha › Up-down Bundle › Ferritin › TspO/MBR protein | 0.53 | 42.0 | 3.65e-01 | 86.3% | 96.2% |
| 1bbhA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.53 | 48.0 | 4.39e-01 | 100.0% | 84.7% |
| 2lhrA00 | 1.20.58.1270 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 32.0 | 3.58e-01 | 83.3% | 78.2% |
| 2dg8D00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 44.0 | 3.78e-01 | 94.1% | 56.6% |
| 6b5cA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.52 | 32.0 | 3.41e-01 | 86.3% | 69.8% |
| 4giwB00 | 1.20.58.900 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain | 0.52 | 44.0 | 3.82e-01 | 96.1% | 82.4% |
| 3wecA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.52 | 38.0 | 2.58e-01 | 77.5% | 22.9% |
| 4wzxA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.52 | 37.0 | 4.19e-01 | 81.4% | 100.0% |
| 3qc1A01 | 1.25.40.540 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAP42-like family | 0.51 | 41.0 | 3.53e-01 | 83.3% | 81.5% |
| 6m90A01 | 1.20.1280.50 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.50 | 36.0 | 3.69e-01 | 99.0% | 77.8% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3175257 | 601.7.1.45 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › NCA2 | 0.70 | 55.0 | 3.83e-01 | 96.1% | 26.1% |
| 3967978 | 191.1.1.49 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_13_2 | 0.61 | 52.0 | 5.16e-01 | 96.1% | 99.1% |
| 5000809 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.61 | 45.0 | 4.31e-01 | 77.5% | 77.4% |
| 3791250 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.60 | 54.0 | 4.71e-01 | 100.0% | 78.1% |
| 5001143 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.59 | 52.0 | 4.71e-01 | 99.0% | 94.3% |
| 4547686 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.59 | 38.0 | 4.54e-01 | 86.3% | 97.1% |
| 3513505 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.57 | 50.0 | 4.58e-01 | 98.0% | 83.7% |
| 4099883 | 11.1.1.154 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgE_dom_N_S | 0.57 | 42.0 | 3.42e-01 | 92.2% | 41.1% |
| 3611311 | 109.4.1.765 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vac14_Fab1_bd | 0.57 | 33.0 | 2.87e-01 | 73.5% | 35.2% |
| 3230983 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.56 | 40.0 | 4.13e-01 | 100.0% | 78.9% |
| 3350782 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.56 | 44.0 | 3.15e-01 | 85.3% | 88.8% |
| 3174795 | 189.1.1.2 ↗ | alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP | 0.56 | 40.0 | 3.28e-01 | 76.5% | 75.6% |
| 3724303 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.55 | 50.0 | 4.44e-01 | 99.0% | 89.7% |
| 3941250 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 40.0 | 3.95e-01 | 75.5% | 81.8% |
| 3358229 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.53 | 40.0 | 3.91e-01 | 80.4% | 92.2% |
| 4551336 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.53 | 36.0 | 3.03e-01 | 71.6% | 60.5% |
| 3355282 | 3758.1.1.0 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins | 0.52 | 40.0 | 3.26e-01 | 81.4% | 89.5% |
| 3938530 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.52 | 45.0 | 3.60e-01 | 99.0% | 88.4% |
| 4060723 | 140.1.1.4 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e,DALR_2 | 0.52 | 40.0 | 3.54e-01 | 82.4% | 83.3% |
| 3501178 | 3755.4.1.31 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Fry_C | 0.52 | 40.0 | 3.24e-01 | 83.3% | 88.8% |
| 4027210 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.51 | 45.0 | 3.78e-01 | 100.0% | 70.3% |
| 4929619 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.51 | 32.0 | 3.28e-01 | 86.3% | 65.3% |
| 4024699 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.51 | 44.0 | 3.99e-01 | 99.0% | 88.3% |
| 3608296 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 36.0 | 3.63e-01 | 75.5% | 75.2% |
| 3800855 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.50 | 44.0 | 3.96e-01 | 100.0% | 88.3% |