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IMGVR_UViG_3300017941_000401-3300017941-Ga0187850_1000083014

Arc-Vir

IMGVR_UViG_3300017941_000401-3300017941-Ga0187850_1000083014

Identity

Kingdom:
archaea

Quality

81.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-57
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.68 54.0 3.60e-01 100.0% 20.7%
2b9dA01 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 37.0 4.25e-01 71.4% 74.4%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.60 52.0 4.01e-01 100.0% 59.5%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 42.0 3.43e-01 80.4% 36.8%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 42.0 3.21e-01 78.6% 30.3%
1fl7D00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.59 49.0 4.13e-01 100.0% 65.1%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.58 39.0 4.15e-01 80.4% 87.0%
4kt5C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 41.0 3.63e-01 78.6% 96.6%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 47.0 3.35e-01 96.4% 47.3%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 45.0 3.81e-01 91.1% 94.9%
1av4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.55 45.0 2.79e-01 100.0% 35.1%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 43.0 3.61e-01 89.3% 91.3%
1ejeA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 47.0 3.28e-01 100.0% 60.9%
2r6vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 39.0 2.95e-01 100.0% 28.0%
1t6eX01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.54 45.0 3.28e-01 98.2% 47.7%
2be3B01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 38.0 2.95e-01 98.2% 31.9%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 39.0 3.37e-01 96.4% 46.5%
2hb0A01 2.60.40.2520 Mainly Beta › Sandwich › Immunoglobulin-like › CFA/I fimbrial subunit E, adhesin domain 0.53 43.0 3.21e-01 100.0% 55.4%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 42.0 2.95e-01 89.3% 46.3%
3i3lA02 3.30.390.160 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.52 39.0 3.17e-01 85.7% 86.4%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.52 44.0 3.76e-01 98.2% 69.4%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.51 35.0 2.71e-01 87.5% 26.5%
3e07A00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.51 40.0 3.49e-01 96.4% 55.6%
1nf3C00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 38.0 3.11e-01 87.5% 40.7%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5032539 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.94 85.0 7.99e-01 100.0% 83.1%
5068970 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.81 50.0 5.86e-01 98.2% 92.1%
4980259 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 52.0 5.74e-01 100.0% 84.4%
3788285 395.1.1.4 ↗ few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › Flocculin_t3 0.77 57.0 6.00e-01 78.6% 88.0%
3575242 1.1.1.14 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 0.74 52.0 4.58e-01 75.0% 49.4%
3590844 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 46.0 5.17e-01 100.0% 90.0%
4982902 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 46.0 5.15e-01 100.0% 92.5%
3473720 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.65 52.0 4.18e-01 89.3% 89.1%
3594959 2.1.1.80 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.63 50.0 4.14e-01 91.1% 82.7%
3309384 9.13.1.1 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › Dirigent 0.61 45.0 3.55e-01 80.4% 66.4%
3350421 387.1.1.53 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › DUF7866 0.60 43.0 4.63e-01 78.6% 100.0%
3301984 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 42.0 4.29e-01 100.0% 80.0%
4018741 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 47.0 3.31e-01 100.0% 71.5%
3997300 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.55 38.0 3.02e-01 92.9% 34.2%
4969974 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.55 40.0 3.20e-01 80.4% 36.8%
3420143 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.55 38.0 2.86e-01 100.0% 26.2%
1639607 389.1.3.1 ↗ few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 0.54 35.0 3.55e-01 100.0% 64.9%
3517335 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.54 43.0 3.52e-01 100.0% 45.2%
4396101 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.53 44.0 2.65e-01 94.6% 61.6%
3811915 243.3.1.26 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › protein_MS5 0.53 36.0 2.93e-01 76.8% 34.2%
3595936 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 37.0 2.33e-01 76.8% 92.1%
3595817 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 44.0 3.63e-01 100.0% 75.5%
4849375 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.52 38.0 3.92e-01 83.9% 90.7%
3302391 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.51 40.0 3.04e-01 87.5% 64.3%
4149046 243.3.1.60 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF5385 0.51 40.0 3.61e-01 100.0% 60.0%
5029482 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 36.0 3.31e-01 80.4% 55.0%
3496425 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.51 36.0 2.84e-01 96.4% 30.7%
3355803 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 34.0 3.78e-01 98.2% 100.0%