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IMGVR_UViG_3300017949_000453-3300017949-Ga0181584_100064605
Arc-VirIMGVR_UViG_3300017949_000453-3300017949-Ga0181584_100064605
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-97
Domain cluster:
rep: ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00132__D29-77_93-127
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06714.18 best | Gp5_OB | 59.4 | 6.80e-16 | 78.9% | 40.3% |
D2
medium
residues 122-204
Domain cluster:
rep: IMGVR_UViG_3300025770_001206-3300025770-Ga0209362_10044857__D8-50_88-143
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wthA02 | 3.10.450.190 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.93 | 85.0 | 7.86e-01 | 96.4% | 96.1% |
| 4n9jA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.60 | 38.0 | 3.50e-01 | 97.6% | 47.7% |
| 7snsB01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 44.0 | 3.62e-01 | 84.3% | 96.9% |
| 2nvnA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.56 | 40.0 | 3.57e-01 | 73.5% | 82.5% |
| 6xmtA02 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.56 | 43.0 | 3.50e-01 | 84.3% | 96.4% |
| 1v58A01 | 3.10.450.70 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Disulphide bond isomerase, DsbC/G, N-terminal | 0.56 | 35.0 | 3.71e-01 | 73.5% | 73.2% |
| 1lomA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.54 | 27.0 | 2.58e-01 | 77.1% | 35.6% |
| 1mdaH00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 43.0 | 2.90e-01 | 90.4% | 34.8% |
| 3v9fA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 45.0 | 3.14e-01 | 96.4% | 37.6% |
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.53 | 40.0 | 3.54e-01 | 86.7% | 81.4% |
| 1yqfB00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.53 | 39.0 | 3.08e-01 | 95.2% | 37.3% |
| 4ci8A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 45.0 | 3.10e-01 | 100.0% | 48.6% |
| 4h3vB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 39.0 | 2.91e-01 | 84.3% | 69.3% |
| 3gywA02 | 3.30.1120.90 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Nucleosome assembly protein | 0.51 | 42.0 | 3.70e-01 | 91.6% | 68.0% |
| 1mhmA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.51 | 44.0 | 3.19e-01 | 97.6% | 34.8% |
| 1cruA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.51 | 44.0 | 2.82e-01 | 100.0% | 38.4% |
| 4g56D00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 43.0 | 2.94e-01 | 94.0% | 35.0% |
| 1tluA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.50 | 43.0 | 3.88e-01 | 95.2% | 73.5% |
| 4qq1C03 | 2.40.128.240 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 35.0 | 3.52e-01 | 74.7% | 85.2% |
| 4fr9A00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 40.0 | 3.48e-01 | 91.6% | 61.0% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995814 | 2.7.1.1 ↗ | beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V | 0.90 | 58.0 | 4.48e-01 | 97.6% | 33.8% |
| 5003246 | 2.7.1.1 ↗ | beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V | 0.73 | 54.0 | 4.37e-01 | 100.0% | 42.7% |
| 3716389 | 77.3.1.0 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain | 0.64 | 45.0 | 2.96e-01 | 72.3% | 86.4% |
| 4404709 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.60 | 43.0 | 3.44e-01 | 96.4% | 36.0% |
| 3183454 | 5.1.5.88 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nucleoporin_N | 0.58 | 47.0 | 2.88e-01 | 90.4% | 34.7% |
| 3284034 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.56 | 43.0 | 3.23e-01 | 83.1% | 86.2% |
| 3615349 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.55 | 46.0 | 2.65e-01 | 94.0% | 16.3% |
| 5051699 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.55 | 44.0 | 4.00e-01 | 85.5% | 77.3% |
| 3731233 | 220.1.1.202 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N | 0.54 | 38.0 | 3.17e-01 | 73.5% | 58.0% |
| 4969673 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 44.0 | 3.01e-01 | 91.6% | 31.7% |
| 3462291 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.53 | 44.0 | 3.04e-01 | 92.8% | 43.1% |
| 5046375 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.53 | 37.0 | 3.83e-01 | 100.0% | 76.2% |
| 3947242 | 206.1.1.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 | 0.53 | 38.0 | 2.52e-01 | 74.7% | 46.2% |
| 3929699 | 5.1.4.244 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_2nd | 0.53 | 43.0 | 3.13e-01 | 92.8% | 36.2% |
| 5052460 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.53 | 46.0 | 3.03e-01 | 98.8% | 40.5% |
| 3263031 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 31.0 | 3.32e-01 | 85.5% | 69.2% |
| 3582576 | 5.1.4.32 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N | 0.52 | 43.0 | 2.97e-01 | 95.2% | 54.2% |
| 5061484 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.52 | 45.0 | 4.07e-01 | 95.2% | 74.6% |
| 4951147 | 881.4.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB | 0.52 | 44.0 | 3.97e-01 | 97.6% | 96.7% |
| 4868007 | 5.1.2.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › NHL | 0.52 | 42.0 | 3.08e-01 | 92.8% | 42.1% |
| 3416871 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.51 | 36.0 | 2.88e-01 | 97.6% | 35.9% |
| 5058595 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 45.0 | 3.01e-01 | 100.0% | 49.9% |
| 2141099 | 5.1.3.22 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH | 0.50 | 43.0 | 2.76e-01 | 100.0% | 38.6% |
| 3562858 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.50 | 44.0 | 2.80e-01 | 100.0% | 30.0% |