←Back to structures
IMGVR_UViG_3300017963_002309-3300017963-Ga0180437_1001013617
Arc-VirIMGVR_UViG_3300017963_002309-3300017963-Ga0180437_1001013617
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-77
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ul4A01 | 4.10.1100.10 | Few Secondary Structures › Irregular › DNA-binding domain of squamosa promoter binding protein-like 12 (lacking the second zinc- binding site) › Transcription factor, SBP-box domain | 0.64 | 36.0 | 3.74e-01 | 76.8% | 58.5% |
| 3vp7A00 | 1.10.418.40 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Autophagy protein 6/Beclin 1 | 0.61 | 46.0 | 3.56e-01 | 84.1% | 48.2% |
| 4gniA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.59 | 39.0 | 4.21e-01 | 88.4% | 82.5% |
| 1kaxA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.59 | 38.0 | 4.11e-01 | 92.8% | 81.8% |
| 2lw7A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.58 | 41.0 | 3.57e-01 | 76.8% | 69.3% |
| 4whiA00 | 2.40.128.600 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 42.0 | 3.77e-01 | 85.5% | 81.4% |
| 2c9oB02 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.54 | 40.0 | 3.48e-01 | 81.2% | 75.2% |
| 2joiA00 | 3.30.310.190 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.54 | 39.0 | 3.54e-01 | 78.3% | 77.1% |
| 5jldA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 43.0 | 3.08e-01 | 94.2% | 40.3% |
| 5vmzA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.53 | 29.0 | 3.48e-01 | 81.2% | 89.7% |
| 2czrA01 | 3.40.1350.70 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › TBP-interacting protein, N-terminal domain | 0.52 | 40.0 | 3.55e-01 | 85.5% | 84.0% |
| 3nm6B00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.52 | 44.0 | 3.15e-01 | 100.0% | 55.0% |
| 4hs5A00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.51 | 40.0 | 3.54e-01 | 87.0% | 83.8% |
| 1bpeA04 | 3.30.210.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 3 › DNA polymerase, thumb domain | 0.51 | 35.0 | 3.71e-01 | 72.5% | 86.4% |
| 5h4eA02 | 3.30.920.50 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain | 0.51 | 36.0 | 3.13e-01 | 76.8% | 75.6% |
| 2ehbD00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.51 | 35.0 | 3.03e-01 | 73.9% | 61.9% |
| 5umbA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 37.0 | 2.84e-01 | 81.2% | 84.5% |
| 1e29A00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.50 | 39.0 | 3.17e-01 | 85.5% | 84.4% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3269220 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.67 | 36.0 | 2.46e-01 | 84.1% | 14.9% |
| 4864637 | 7008.1.1.1 ↗ | alpha arrays › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › Hex_IIIa | 0.65 | 49.0 | 4.04e-01 | 84.1% | 92.6% |
| 3250581 | 3409.1.1.1 ↗ | a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › APG6 | 0.60 | 45.0 | 2.98e-01 | 84.1% | 29.7% |
| 3335974 | 3304.1.1.2 ↗ | a+b two layers › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › SUS_N | 0.58 | 43.0 | 3.46e-01 | 84.1% | 40.0% |
| 3493703 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.58 | 32.0 | 3.72e-01 | 81.2% | 80.0% |
| 1921564 | 101.1.2.237 ↗ | alpha arrays › HTH › HTH › winged helix domain › ThcOx | 0.58 | 45.0 | 3.82e-01 | 85.5% | 65.2% |
| 3806421 | 247.1.1.38 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C | 0.56 | 38.0 | 3.96e-01 | 72.5% | 95.4% |
| 3391564 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.56 | 38.0 | 4.21e-01 | 89.9% | 98.0% |
| 4224260 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 42.0 | 3.81e-01 | 82.6% | 82.1% |
| 3296731 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.55 | 33.0 | 3.72e-01 | 85.5% | 88.9% |
| 3365759 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 32.0 | 3.85e-01 | 84.1% | 95.0% |
| 3263503 | 331.4.1.9 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C | 0.54 | 37.0 | 3.67e-01 | 72.5% | 89.3% |
| 2491473 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 40.0 | 3.75e-01 | 81.2% | 80.2% |
| 3566388 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 31.0 | 3.62e-01 | 85.5% | 86.0% |
| 3787709 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 30.0 | 3.59e-01 | 85.5% | 90.0% |
| 3312712 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 33.0 | 3.67e-01 | 85.5% | 86.0% |
| 5068097 | 2484.1.1.71 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RACo_C_ter | 0.53 | 39.0 | 2.45e-01 | 81.2% | 36.5% |
| 3357726 | 386.1.1.207 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED_2 | 0.53 | 40.0 | 3.95e-01 | 100.0% | 77.3% |
| 2507075 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.52 | 39.0 | 3.73e-01 | 82.6% | 90.6% |
| 3861324 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.52 | 30.0 | 3.34e-01 | 81.2% | 76.0% |
| 4927544 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 26.0 | 3.24e-01 | 97.1% | 88.6% |
| 3524423 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 34.0 | 3.66e-01 | 98.6% | 85.5% |
| 3581251 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 30.0 | 2.87e-01 | 81.2% | 44.7% |
| 2096143 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 37.0 | 3.62e-01 | 81.2% | 87.3% |
| 3438045 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.51 | 37.0 | 3.79e-01 | 100.0% | 86.2% |
| 3437709 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.50 | 32.0 | 3.51e-01 | 85.5% | 88.0% |
| 3620992 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.50 | 33.0 | 3.66e-01 | 91.3% | 94.0% |
D2
high
residues 83-180
Domain cluster:
rep: JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00523__D148-242