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IMGVR_UViG_3300017969_004891-3300017969-Ga0181585_100103754

Arc-Vir

IMGVR_UViG_3300017969_004891-3300017969-Ga0181585_100103754

Quality

92.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-286
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF04055.28 best Radical_SAM 45.1 1.80e-11 58.4% 82.5%
PF13353.12 Fer4_12 22.0 2.50e-04 45.5% 73.7%
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4m7tA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.74 58.0 6.28e-01 92.0% 94.3%
4k36B00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.66 58.0 5.34e-01 92.7% 94.5%
5v1qB01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.65 54.0 5.49e-01 86.4% 100.0%
4r33A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.62 52.0 4.67e-01 86.0% 77.3%
3t7vA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.62 52.0 4.88e-01 86.0% 81.0%
4w7wA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.59 49.0 4.73e-01 85.7% 97.4%
3zo9A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.58 48.0 4.29e-01 85.7% 93.7%
5yrpA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.56 35.0 3.97e-01 92.0% 79.9%
4fhdA02 3.80.30.30 Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › 0.55 39.0 4.35e-01 80.8% 89.9%
4us5C00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.54 45.0 4.26e-01 85.3% 98.8%
1jcmP00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 39.0 4.13e-01 86.7% 81.5%
4aeeA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 44.0 4.27e-01 85.7% 91.7%
4c7oA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 30.0 3.64e-01 91.3% 79.9%
6bmaA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 38.0 4.02e-01 85.3% 80.7%
3bg3A02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 44.0 4.24e-01 86.4% 92.2%
3b5vA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 38.0 4.02e-01 85.3% 82.6%
2ww5A02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.53 36.0 4.20e-01 71.7% 97.0%
3k13A00 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.53 42.0 4.23e-01 93.7% 82.5%
4ov4A01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 43.0 4.38e-01 84.6% 95.3%
3ceaA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 28.0 3.79e-01 87.8% 98.0%
4n4pD00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 44.0 4.40e-01 87.1% 97.9%
7upvA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 43.0 3.75e-01 85.7% 99.0%
3erpA01 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.52 44.0 4.38e-01 89.5% 95.0%
1qhoA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 42.0 3.79e-01 85.7% 96.8%
4cqbA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.52 44.0 4.37e-01 89.9% 91.4%
1rqeA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 43.0 4.33e-01 86.7% 88.4%
4nh0B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 37.0 3.68e-01 73.4% 71.2%
7tjbA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.51 33.0 3.86e-01 95.1% 88.8%
2p4gA00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.51 42.0 4.49e-01 88.5% 98.8%
4fb7A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 37.0 3.90e-01 86.0% 80.5%
1mzhA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 38.0 4.19e-01 86.4% 96.9%
6cblD01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.50 29.0 3.27e-01 93.4% 71.0%
3hv8A00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.50 36.0 3.94e-01 86.0% 86.8%
7dz9A01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.50 41.0 4.33e-01 85.7% 100.0%
3n4fA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.50 41.0 4.28e-01 87.8% 92.4%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3388038 2002.1.1.232 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Fer4_12 0.87 76.0 7.53e-01 98.6% 87.4%
4958428 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.73 58.0 6.25e-01 98.6% 93.2%
5056448 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.72 63.0 5.97e-01 92.0% 88.5%
4954052 2002.1.1.224 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › SPASM 0.71 59.0 5.84e-01 92.0% 82.2%
5062088 2002.1.1.449 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF3641 0.70 62.0 6.08e-01 92.7% 94.2%
3954200 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.69 58.0 6.06e-01 87.4% 94.6%
5067443 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.69 60.0 5.42e-01 91.6% 81.2%
5054052 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.68 61.0 5.62e-01 92.0% 93.1%
4986886 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.68 59.0 5.48e-01 89.9% 92.0%
4949910 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.68 59.0 5.33e-01 90.9% 87.1%
3969428 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.67 60.0 5.57e-01 93.0% 98.6%
4941152 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.67 60.0 5.50e-01 92.3% 95.5%
4416801 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.67 63.0 5.72e-01 98.6% 99.2%
4958342 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.67 60.0 5.44e-01 92.7% 95.9%
5043714 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.67 59.0 5.41e-01 92.0% 91.4%
4190564 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.66 59.0 5.24e-01 93.4% 92.5%
4958130 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.66 59.0 5.49e-01 92.3% 95.1%
4934129 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.66 59.0 5.47e-01 92.3% 100.0%
4975092 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.66 58.0 5.44e-01 92.0% 95.7%
4967377 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.66 58.0 5.21e-01 92.3% 92.8%
4033370 2002.1.1.217 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,YfkB 0.66 58.0 5.27e-01 92.0% 91.4%
4260578 2002.1.1.121 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C 0.65 55.0 5.48e-01 87.1% 100.0%
4929847 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.65 57.0 5.41e-01 90.6% 100.0%
4128825 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.65 58.0 5.60e-01 92.7% 92.1%
4974940 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.65 57.0 5.30e-01 90.9% 96.0%
4946054 2002.1.1.442 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Mob_synth_C 0.65 57.0 5.68e-01 91.3% 99.7%
5020840 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.65 58.0 5.47e-01 92.3% 90.3%
4183574 2002.1.1.121 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C 0.65 56.0 5.50e-01 90.2% 99.4%
2870555 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.65 56.0 5.34e-01 89.9% 93.3%
4934106 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.65 56.0 5.30e-01 89.5% 95.8%
4983888 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.65 60.0 5.91e-01 96.9% 98.7%
5050361 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.64 56.0 4.97e-01 91.6% 77.0%
5050328 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.64 60.0 5.86e-01 99.0% 96.1%
4994600 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.64 43.0 5.14e-01 98.6% 97.5%
3603477 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.64 56.0 5.67e-01 90.9% 98.9%
4932017 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.64 56.0 5.05e-01 91.6% 79.7%
5011835 2002.1.1.446 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF3463 0.63 56.0 5.36e-01 92.0% 89.2%
5022715 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.63 55.0 5.63e-01 90.9% 99.6%
5057587 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.62 55.0 5.21e-01 92.0% 89.6%
4992726 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.62 45.0 4.70e-01 92.7% 79.2%
5054604 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.62 55.0 5.47e-01 93.4% 98.3%
4970204 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.62 43.0 4.83e-01 71.0% 95.2%
4280202 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.60 51.0 5.37e-01 86.0% 100.0%
3975681 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.60 52.0 5.34e-01 91.6% 92.9%
4997146 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.60 45.0 4.65e-01 92.7% 81.5%
4941301 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.59 53.0 5.10e-01 92.7% 90.3%
5035420 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.58 52.0 5.12e-01 93.0% 96.0%
4192268 2002.1.1.122 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,BATS 0.57 48.0 4.60e-01 86.4% 82.5%
4927433 2002.1.1.443 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › BATS 0.57 47.0 4.54e-01 86.0% 81.5%
4566493 2002.1.1.152 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_3 0.56 48.0 4.38e-01 88.8% 77.5%
5028114 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.56 26.0 3.52e-01 77.6% 82.8%
5074581 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.55 46.0 4.70e-01 93.7% 88.9%
4989163 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.55 44.0 4.79e-01 93.0% 99.6%
4979883 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.55 26.0 3.64e-01 81.5% 90.7%
3785857 7514.1.1.3 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_6 0.54 32.0 4.02e-01 73.1% 95.4%
5083154 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.52 25.0 3.40e-01 89.5% 88.1%
4056922 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.52 25.0 3.57e-01 81.5% 97.6%
4997440 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.52 25.0 3.56e-01 81.1% 96.9%
4965301 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.52 25.0 3.64e-01 81.1% 100.0%
4928866 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.52 24.0 3.50e-01 81.1% 95.4%
4482273 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.52 38.0 4.27e-01 86.7% 97.7%
4010166 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.51 24.0 3.29e-01 81.1% 84.8%
4097384 2004.1.1.474 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N, MMR_HSR1 0.51 33.0 3.95e-01 86.4% 98.9%
3966569 2002.5.1.0 a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain 0.50 38.0 4.09e-01 85.0% 89.8%
3950176 2002.5.1.1 a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.50 39.0 4.07e-01 89.5% 85.6%
3816414 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.50 25.0 3.57e-01 86.4% 100.0%