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IMGVR_UViG_3300017987_000872-3300017987-Ga0180431_100205238

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300017987_000872-3300017987-Ga0180431_100205238 ↗
Kingdom:: archaea

Quality

80.6 mean pLDDT

Cluster

View cluster (166 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 46-159

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2obdA01	3.15.20.10	Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2	0.59	44.0	3.33e-01	79.8%	86.2%
3k6qA02	3.30.160.620	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain ›	0.51	26.0	2.96e-01	85.1%	64.0%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4932840	2484.1.1.38 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2	0.59	38.0	3.61e-01	70.2%	56.2%
3616681	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.55	34.0	3.93e-01	86.8%	87.5%
5012709	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.54	44.0	3.48e-01	86.8%	66.8%
3604663	304.51.1.1 ↗	a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C	0.54	27.0	2.63e-01	94.7%	40.8%
1595160	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.53	42.0	3.88e-01	85.1%	94.7%
3698880	2003.1.9.1 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF	0.52	37.0	2.70e-01	91.2%	27.2%
4184676	101.1.1.32 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Sigma54_DBD	0.52	37.0	3.40e-01	77.2%	56.7%

D2 medium residues 160-319

PDB

Domain cluster: rep: DQ340064.2__ABC61276.1__X__00022__D272-425

CATH (17)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3dktA02	3.30.2320.10	Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain	0.70	39.0	4.99e-01	98.1%	91.6%
2pk8A00	3.30.2320.10	Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain	0.68	39.0	4.98e-01	97.5%	95.7%
3bqwA02	3.30.1930.10	Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain	0.61	46.0	5.02e-01	99.4%	91.2%
3d6iA00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.60	29.0	3.48e-01	85.6%	67.3%
3pl5A03	3.30.1180.10	Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 ›	0.59	32.0	3.57e-01	94.4%	66.1%
4efaE02	3.30.2320.30	Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal	0.58	36.0	3.98e-01	99.4%	76.0%
6vq6I01	3.30.2320.30	Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal	0.58	36.0	4.32e-01	99.4%	91.7%
2lstA00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.57	31.0	3.43e-01	85.6%	64.6%
1r26A00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.57	28.0	3.30e-01	85.6%	65.5%
1vrsD00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.55	30.0	3.45e-01	85.0%	70.3%
3gnjA00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.55	27.0	3.24e-01	85.0%	66.7%
3h79A00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.55	29.0	3.41e-01	85.6%	71.3%
3njaA02	2.10.70.100	Mainly Beta › Ribbon › Complement Module; domain 1 ›	0.54	18.0	3.22e-01	85.6%	100.0%
2dlxA01	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.54	28.0	3.34e-01	84.4%	70.8%
3q6oA01	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.52	29.0	3.17e-01	85.6%	64.6%
8d7eC01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	27.0	3.53e-01	98.8%	95.2%
2btqB02	3.30.1330.20	Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain	0.50	28.0	3.54e-01	91.9%	92.4%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4873245	2485.3.1.2 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18	0.73	56.0	6.22e-01	98.1%	100.0%
5057686	2485.1.1.0 ↗	a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like	0.57	27.0	2.90e-01	86.9%	49.3%
1822815	6173.1.1.1 ↗	beta barrels › V1/V2 domain in HIV gp120 › V1/V2 domain in HIV gp120 › V1/V2 domain in HIV gp120 › GP120	0.57	16.0	2.74e-01	75.6%	68.8%
4988354	2485.1.1.37 ↗	a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_2	0.57	30.0	3.47e-01	85.0%	69.6%
3939892	2485.1.1.87 ↗	a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › UBX7_N	0.55	29.0	3.32e-01	85.6%	65.6%
3210174	2485.1.1.0 ↗	a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like	0.54	28.0	2.47e-01	87.5%	31.0%
3608608	2485.1.1.0 ↗	a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like	0.54	29.0	2.81e-01	86.9%	45.4%
3832680	2485.1.1.0 ↗	a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like	0.51	29.0	3.09e-01	86.9%	61.6%