←Back to structures

IMGVR_UViG_3300017991_000003-3300017991-Ga0180434_10000034177

Arc-Vir

IMGVR_UViG_3300017991_000003-3300017991-Ga0180434_10000034177

Identity

Kingdom:
archaea

Quality

68.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-53
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vq8P03 1.10.1200.60 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.71 56.0 5.49e-01 84.3% 80.0%
1lm7A00 3.90.1290.10 Alpha Beta › Alpha-Beta Complex › beta-hairpin-alpha-hairpin repeat › Plakin repeat 0.71 53.0 3.41e-01 80.4% 72.3%
2es9A00 1.20.1290.30 Mainly Alpha › Up-down Bundle › AhpD-like › 0.61 44.0 3.65e-01 80.4% 44.0%
3f4sA02 1.10.40.80 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › 0.59 45.0 4.24e-01 84.3% 79.7%
1u1jA01 3.20.20.210 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.58 50.0 3.00e-01 100.0% 96.3%
1d8cA03 1.20.1220.12 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III 0.58 46.0 3.51e-01 94.1% 94.8%
2khvA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.58 48.0 4.20e-01 100.0% 75.3%
1vfrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.57 48.0 3.20e-01 98.0% 27.6%
2px7A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 46.0 3.08e-01 92.2% 88.7%
1zv1A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.55 44.0 4.29e-01 100.0% 91.5%
5k7fA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 45.0 3.45e-01 100.0% 63.0%
3t15A02 1.10.8.1070 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 42.0 3.51e-01 100.0% 80.6%
2rfqC03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.52 46.0 3.19e-01 100.0% 57.7%
6ioyC02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 34.0 2.34e-01 70.6% 30.8%
2jgdB02 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.50 39.0 2.53e-01 98.0% 32.9%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4945730 3050.1.1.0 ↗ alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain 0.74 57.0 4.65e-01 82.4% 50.0%
4131981 3050.1.1.7 ↗ alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal_L19e_C 0.72 57.0 4.72e-01 84.3% 51.8%
4243068 3050.1.1.7 ↗ alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal_L19e_C 0.72 55.0 4.53e-01 82.4% 50.0%
4566201 3050.1.1.7 ↗ alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal_L19e_C 0.72 57.0 4.62e-01 84.3% 48.9%
3594096 3050.1.1.0 ↗ alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain 0.68 58.0 4.28e-01 100.0% 37.9%
3319901 3050.1.1.7 ↗ alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal_L19e_C 0.66 58.0 4.31e-01 100.0% 40.7%
3797947 181.2.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › CtsR dimerization domain › CtsR dimerization domain 0.65 54.0 5.33e-01 92.2% 90.9%
5013989 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.64 53.0 4.46e-01 100.0% 85.7%
3742303 310.2.1.1 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.61 41.0 2.83e-01 72.5% 19.6%
5066143 5041.1.1.0 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.57 40.0 3.53e-01 72.5% 49.3%
4097350 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 41.0 3.83e-01 76.5% 87.7%
4554618 304.103.1.1 ↗ a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase 0.57 48.0 3.19e-01 98.0% 27.5%
3821280 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.55 42.0 3.90e-01 90.2% 71.4%
3318685 284.1.3.2 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.54 38.0 3.03e-01 74.5% 36.2%
3831406 509.1.1.12 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PF25972 0.53 43.0 3.91e-01 90.2% 68.6%