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IMGVR_UViG_3300017991_000003-3300017991-Ga0180434_10000034198

Arc-Vir

IMGVR_UViG_3300017991_000003-3300017991-Ga0180434_10000034198

Identity

Kingdom:
archaea

Quality

66.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-59
PDB
D2 high residues 65-117
PDB
Domain cluster: representative
CATH (61)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hyoA01 2.30.30.230 Mainly Beta › Roll › SH3 type barrels. › Fumarylacetoacetase, N-terminal domain 0.69 52.0 4.17e-01 84.9% 92.0%
1fgyA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 53.0 4.13e-01 88.7% 81.7%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 58.0 5.28e-01 100.0% 78.1%
2vrwB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 52.0 4.16e-01 90.6% 63.6%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 57.0 5.17e-01 96.2% 72.6%
2e6nA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 57.0 4.69e-01 100.0% 52.9%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 56.0 5.42e-01 98.1% 95.2%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 57.0 5.10e-01 100.0% 77.5%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 52.0 4.23e-01 88.7% 78.7%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.66 52.0 3.58e-01 90.6% 50.0%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 52.0 5.19e-01 88.7% 87.5%
3pp2A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 51.0 4.16e-01 90.6% 83.9%
4gzuB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 51.0 4.45e-01 90.6% 81.3%
4ngdA02 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.66 54.0 4.34e-01 96.2% 89.5%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 55.0 5.39e-01 98.1% 94.9%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 55.0 4.46e-01 98.1% 61.1%
1gn4A02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.65 43.0 3.39e-01 88.7% 31.3%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 50.0 4.06e-01 86.8% 74.8%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 51.0 4.01e-01 88.7% 76.9%
1dbhA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 49.0 3.88e-01 88.7% 70.3%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.65 53.0 4.45e-01 100.0% 65.7%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 51.0 3.96e-01 88.7% 81.7%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 48.0 4.03e-01 88.7% 87.0%
2coaA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 50.0 4.00e-01 90.6% 80.5%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 54.0 4.51e-01 100.0% 56.0%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 49.0 3.78e-01 90.6% 63.1%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 48.0 4.66e-01 84.9% 88.7%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 53.0 4.76e-01 100.0% 67.5%
1qmyA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 49.0 3.61e-01 100.0% 30.8%
2k2dA00 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.63 44.0 4.63e-01 86.8% 83.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 4.89e-01 98.1% 96.8%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 48.0 3.95e-01 90.6% 85.2%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.61e-01 94.3% 100.0%
3meuB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.41e-01 98.1% 95.9%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 44.0 3.66e-01 86.8% 66.7%
1pfjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 45.0 3.71e-01 90.6% 75.0%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.58 44.0 3.42e-01 88.7% 64.2%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.38e-01 90.6% 96.4%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 3.57e-01 90.6% 76.9%
2ox7A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.57 48.0 4.47e-01 100.0% 89.9%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.57 47.0 4.05e-01 100.0% 95.7%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.56 47.0 4.53e-01 100.0% 96.8%
4yhbA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 46.0 3.63e-01 100.0% 92.2%
5yv7A00 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.55 37.0 3.63e-01 100.0% 63.3%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.55 42.0 3.52e-01 88.7% 72.5%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.54 41.0 3.31e-01 88.7% 70.6%
3zssA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 47.0 4.01e-01 100.0% 75.6%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.53 42.0 3.61e-01 100.0% 53.3%
5xyib00 2.20.25.100 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Ribosomal protein S27 0.53 40.0 3.63e-01 88.7% 65.9%
6q61A00 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.53 35.0 3.47e-01 100.0% 64.4%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 41.0 4.22e-01 92.5% 93.9%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.52 40.0 3.21e-01 90.6% 45.2%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.52 43.0 2.95e-01 100.0% 30.1%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.52 41.0 3.37e-01 100.0% 58.1%
2jneA00 2.10.290.10 Mainly Beta › Ribbon › Rubredoxin-like › YfgJ-like 0.52 43.0 4.02e-01 100.0% 81.7%
4pqdA00 3.90.570.10 Alpha Beta › Alpha-Beta Complex › Sugar Binding Protein, Amyloid A4 Protein; Chain A › Amyloidogenic glycoprotein, heparin-binding domain 0.52 39.0 3.32e-01 90.6% 83.8%
5by5A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 42.0 3.38e-01 96.2% 67.0%
1aalB00 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.51 34.0 3.42e-01 100.0% 66.7%
4bd9B01 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.51 35.0 3.54e-01 100.0% 70.4%
2hrvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 39.0 3.43e-01 96.2% 68.4%
1zc1A01 2.40.40.50 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain 0.50 42.0 3.49e-01 100.0% 91.3%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4932434 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.71 57.0 5.24e-01 90.6% 71.4%
3471368 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.71 55.0 4.43e-01 88.7% 85.5%
3223271 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 58.0 5.04e-01 100.0% 58.8%
3937468 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 53.0 4.35e-01 88.7% 77.3%
4941512 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 57.0 5.33e-01 98.1% 80.0%
3789579 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 52.0 4.21e-01 88.7% 85.2%
3940063 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 52.0 4.43e-01 88.7% 83.2%
3830187 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 55.0 5.53e-01 96.2% 94.5%
4027577 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 51.0 4.00e-01 88.7% 79.2%
5036621 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 56.0 5.54e-01 98.1% 94.5%
3499509 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 53.0 4.19e-01 92.5% 75.0%
3509362 220.1.1.160 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.66 51.0 4.27e-01 86.8% 77.7%
3330943 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.65 55.0 5.51e-01 98.1% 96.4%
4637164 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 52.0 3.89e-01 92.5% 56.6%
4250862 4027.1.1.0 ↗ beta barrels › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit 0.64 45.0 4.83e-01 90.6% 88.9%
3290662 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 54.0 4.17e-01 100.0% 49.2%
198615 375.1.1.52 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_6 0.63 44.0 4.63e-01 86.8% 83.0%
3579987 220.1.1.160 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.63 49.0 3.95e-01 88.7% 66.4%
3354387 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.63 50.0 4.49e-01 98.1% 91.8%
953 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 49.0 4.21e-01 92.5% 85.3%
3878278 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 48.0 3.64e-01 92.5% 70.0%
5044354 375.1.1.12 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e 0.61 49.0 4.39e-01 88.7% 72.0%
3389668 220.1.1.160 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.60 48.0 4.04e-01 92.5% 75.0%
3724129 375.1.1.52 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_6 0.59 42.0 4.57e-01 88.7% 100.0%
3815721 375.1.1.52 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_6 0.59 43.0 4.26e-01 86.8% 74.5%
4217944 11.1.4.132 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › VasX_N 0.57 45.0 3.53e-01 100.0% 58.0%
3752218 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.56 36.0 3.35e-01 86.8% 50.0%
3822266 375.1.1.51 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 0.56 36.0 4.03e-01 94.3% 97.2%
5054307 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 41.0 4.34e-01 84.9% 93.3%
4938218 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 42.0 4.38e-01 92.5% 88.0%
5035944 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 45.0 4.35e-01 92.5% 91.7%
3389022 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.55 40.0 4.11e-01 90.6% 86.0%
3184022 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.55 46.0 3.56e-01 100.0% 98.5%
3453727 375.1.1.52 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_6 0.55 40.0 3.91e-01 88.7% 71.7%
3604642 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 40.0 4.29e-01 88.7% 95.6%
1122383 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.54 35.0 3.12e-01 86.8% 44.9%
5052150 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 44.0 4.38e-01 92.5% 94.5%
5019693 375.1.1.58 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.54 41.0 4.17e-01 84.9% 96.0%
3919493 10.32.1.234 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PGAP1_3rd 0.53 46.0 3.40e-01 100.0% 88.3%
3881270 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 3.61e-01 100.0% 62.5%
4971115 2002.4.1.2 ↗ a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › QRPTase_C 0.53 36.0 2.28e-01 86.8% 13.0%
4995774 375.1.1.185 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 0.53 37.0 4.03e-01 83.0% 100.0%
4403595 12.1.1.52 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GLGE_C 0.53 43.0 3.73e-01 96.2% 74.4%
3413254 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.52 36.0 3.23e-01 100.0% 50.7%
4002078 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.52 36.0 3.54e-01 100.0% 66.7%
4971396 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 42.0 4.18e-01 92.5% 90.9%
3531267 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.52 35.0 3.20e-01 100.0% 51.4%
4941241 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 39.0 4.00e-01 96.2% 92.0%
4930203 375.1.1.58 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.51 41.0 4.13e-01 94.3% 89.1%
4991294 375.1.1.58 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.51 39.0 4.04e-01 94.3% 96.0%
5012898 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 40.0 3.97e-01 96.2% 85.0%
4956457 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 38.0 3.88e-01 94.3% 92.0%
3428296 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 41.0 3.87e-01 92.5% 87.7%
4948014 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 40.0 4.09e-01 92.5% 96.0%