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IMGVR_UViG_3300017991_000003-3300017991-Ga0180434_10000034210

Arc-Vir

IMGVR_UViG_3300017991_000003-3300017991-Ga0180434_10000034210

Identity

Kingdom:
archaea

Quality

60.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-182
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zruC01 2.60.520.10 Mainly Beta › Sandwich › Triple-stranded beta-helix › Phage fibre proteins 0.70 49.0 5.36e-01 97.5% 86.9%
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.70 46.0 5.19e-01 94.3% 86.8%
1nh2C00 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.58 19.0 3.33e-01 70.9% 92.0%
2q3xA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.53 38.0 4.05e-01 88.6% 82.4%
2rckA01 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.51 39.0 3.49e-01 79.7% 97.7%
2r2cB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 34.0 4.07e-01 86.1% 100.0%
3qt2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 35.0 4.06e-01 94.3% 100.0%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038875 4166.1.1.0 ↗ beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like 0.84 54.0 6.33e-01 91.8% 89.6%
3797626 74.1.1.0 ↗ beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain 0.59 20.0 3.37e-01 72.8% 88.9%
2770992 74.1.1.2 ↗ beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › TFIIA 0.58 22.0 3.34e-01 72.8% 85.0%
3995211 74.1.1.2 ↗ beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › TFIIA 0.57 20.0 3.26e-01 74.7% 88.9%
4028824 74.1.1.0 ↗ beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain 0.51 19.0 3.21e-01 72.2% 98.1%
D2 high residues 325-470
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7q6gA01 3.30.1490.110 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.71 38.0 5.07e-01 100.0% 98.7%
6hciB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 40.0 4.79e-01 99.3% 83.8%
3isrA02 2.60.40.2250 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 35.0 4.16e-01 100.0% 78.0%
4mbrA02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 44.0 4.23e-01 100.0% 62.7%
2vrqA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 37.0 3.90e-01 98.6% 65.2%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 37.0 4.64e-01 97.3% 100.0%
1yi9A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.61 35.0 3.65e-01 100.0% 59.1%
4i0wD02 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.60 41.0 4.40e-01 98.6% 78.5%
1iarB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 34.0 4.05e-01 95.2% 84.4%
2f1fA02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.58 26.0 3.45e-01 87.7% 76.9%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 23.0 2.70e-01 100.0% 46.2%
2vrsA03 2.60.90.40 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.56 39.0 4.07e-01 99.3% 78.0%
4oq8A00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.52 42.0 4.27e-01 100.0% 86.1%
3c9aA03 2.20.20.160 Mainly Beta › Single Sheet › Anthopleurin-A › 0.51 24.0 3.26e-01 98.6% 88.7%
1cwpA00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.50 43.0 4.29e-01 100.0% 88.6%
1hx6A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 41.0 4.22e-01 100.0% 90.1%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1714453 11.21.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like 0.64 40.0 4.83e-01 98.6% 96.8%
4938062 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 41.0 4.64e-01 100.0% 85.5%
3722942 10.32.1.28 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Sad1_UNC 0.61 39.0 3.79e-01 100.0% 55.8%
3458744 10.32.1.28 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Sad1_UNC 0.61 39.0 3.70e-01 100.0% 53.5%
3177320 10.32.1.28 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Sad1_UNC 0.61 39.0 3.76e-01 100.0% 55.8%
3709717 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 36.0 4.13e-01 96.6% 84.5%
1385851 5092.1.1.3 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Reo_sigmaC 0.57 39.0 4.09e-01 99.3% 76.9%
3266205 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.56 35.0 4.07e-01 96.6% 89.0%
3836149 11.1.1.863 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_VIN3 0.55 34.0 3.97e-01 98.6% 89.0%
3252754 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.54 43.0 4.53e-01 100.0% 93.8%
3710431 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.53 34.0 4.12e-01 100.0% 98.9%
5079697 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 30.0 3.82e-01 91.8% 100.0%
297441 10.2.1.19 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Bromo_coat 0.52 44.0 4.21e-01 100.0% 78.2%
3872029 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.52 36.0 4.15e-01 100.0% 98.1%
3707054 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.52 35.0 3.00e-01 100.0% 43.0%
3865949 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.52 36.0 4.17e-01 100.0% 100.0%
4936512 304.133.1.1 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.51 33.0 4.02e-01 100.0% 98.0%
3891360 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.51 37.0 4.13e-01 100.0% 98.2%
3727755 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 42.0 4.42e-01 100.0% 98.5%