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IMGVR_UViG_3300018002_000020-3300018002-Ga0187868_10021259

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300018002_000020-3300018002-Ga0187868_10021259 ↗
Kingdom:: archaea

Quality

80.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 49-126

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4heoA00	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.70	36.0	4.18e-01	100.0%	69.1%
4u7bA01	1.10.10.1450	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.64	32.0	3.84e-01	96.2%	72.5%
4nqwA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.62	47.0	5.05e-01	82.1%	98.4%
2zgyA02	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.60	51.0	4.31e-01	98.7%	72.1%
1x9bA00	1.20.58.290	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121.	0.58	29.0	3.38e-01	80.8%	66.0%
2a3vB01	1.10.150.130	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain	0.57	40.0	3.88e-01	75.6%	87.2%
2g9wA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	38.0	4.01e-01	79.5%	85.1%
5z62E00	1.25.40.40	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI	0.54	37.0	3.36e-01	70.5%	80.7%
1aepA00	1.20.120.20	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein	0.53	45.0	3.73e-01	100.0%	75.8%
3qbeA02	1.20.1090.10	Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain	0.53	43.0	3.37e-01	92.3%	68.3%
6d2qA02	1.20.80.10	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein ›	0.53	42.0	3.88e-01	88.5%	91.3%
1zkeA00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	39.0	3.90e-01	88.5%	82.7%
4i16A00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.50	36.0	3.51e-01	84.6%	67.8%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3363617	101.1.1.31 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4	0.69	59.0	5.79e-01	94.9%	90.6%
3663639	101.1.1.30 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4	0.68	61.0	4.68e-01	97.4%	47.9%
3436406	3755.4.1.17 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Rx_N	0.62	42.0	3.46e-01	98.7%	39.3%
5072974	604.7.1.0 ↗	alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A	0.59	47.0	4.66e-01	98.7%	83.5%
3331938	192.8.1.0 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain	0.58	50.0	5.00e-01	97.4%	91.3%
3845	604.16.1.1 ↗	alpha bundles › Spectrin repeat-like › Hypothetical membrane protein Ta0354, soluble domain › Hypothetical membrane protein Ta0354, soluble domain › DUF3198	0.58	29.0	3.38e-01	80.8%	66.0%
3706210	7015.1.1.1 ↗	alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC	0.57	43.0	3.15e-01	80.8%	76.4%
4956137	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.57	48.0	4.61e-01	94.9%	93.3%
3964463	101.1.1.31 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4	0.53	45.0	4.15e-01	100.0%	70.9%
3590178	2484.1.1.199 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut	0.53	42.0	2.91e-01	88.5%	32.4%
3408282	109.7.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › COX5A	0.52	36.0	3.26e-01	71.8%	78.9%
3952920	3625.1.1.1 ↗	alpha bundles › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain › Cmr2_hel_dom2	0.52	37.0	3.68e-01	76.9%	83.5%