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IMGVR_UViG_3300018005_000640-3300018005-Ga0187878_100390815
Arc-VirIMGVR_UViG_3300018005_000640-3300018005-Ga0187878_100390815
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-52_134-176
Domain cluster:
representative
CATH (63)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3weoA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.68 | 51.0 | 3.32e-01 | 80.5% | 19.0% |
| 3hyiA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.65 | 51.0 | 3.84e-01 | 85.7% | 91.1% |
| 2y1rK00 | 3.30.70.1950 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 45.0 | 4.29e-01 | 84.4% | 64.1% |
| 2cqpA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.62 | 48.0 | 4.45e-01 | 84.4% | 77.6% |
| 2l48A00 | 3.30.70.2030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 48.0 | 4.65e-01 | 93.5% | 76.5% |
| 4ba0A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.61 | 47.0 | 3.01e-01 | 84.4% | 16.9% |
| 3ezjA02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.61 | 46.0 | 4.84e-01 | 83.1% | 94.1% |
| 2l9dA00 | 3.30.70.2340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF12112 family, DUF3579 | 0.61 | 49.0 | 4.43e-01 | 89.6% | 76.9% |
| 2anrA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.61 | 46.0 | 4.73e-01 | 83.1% | 93.3% |
| 6mfxA02 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.61 | 47.0 | 3.78e-01 | 85.7% | 76.2% |
| 3ossD00 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.60 | 46.0 | 3.74e-01 | 84.4% | 75.2% |
| 2cqiA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 47.0 | 4.30e-01 | 85.7% | 69.9% |
| 1a7jA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 52.0 | 3.60e-01 | 100.0% | 96.8% |
| 2lepA00 | 3.30.70.2350 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 42.0 | 4.48e-01 | 81.8% | 92.1% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 40.0 | 3.49e-01 | 100.0% | 47.7% |
| 2m9kA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 46.0 | 4.40e-01 | 88.3% | 71.0% |
| 2jvrA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 45.0 | 4.55e-01 | 84.4% | 87.5% |
| 1in0A01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 44.0 | 4.61e-01 | 87.0% | 88.6% |
| 1yj7B01 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.59 | 47.0 | 4.86e-01 | 89.6% | 97.2% |
| 2w5yA01 | 2.170.270.10 | Mainly Beta › Beta Complex › Beta-clip-like › SET domain | 0.59 | 43.0 | 3.48e-01 | 77.9% | 72.9% |
| 4ig1A00 | 3.10.520.10 | Alpha Beta › Roll › T-fold › ApbE-like domains | 0.58 | 50.0 | 3.37e-01 | 100.0% | 36.0% |
| 3c0wA02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.58 | 47.0 | 4.33e-01 | 89.6% | 68.0% |
| 2e44A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 46.0 | 4.73e-01 | 88.3% | 90.7% |
| 2go9A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 46.0 | 4.68e-01 | 89.6% | 92.2% |
| 4ctaA02 | 3.30.70.2860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 43.0 | 4.38e-01 | 83.1% | 85.3% |
| 2b4vA03 | 3.30.70.1970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 45.0 | 4.26e-01 | 89.6% | 75.8% |
| 4iw7A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.57 | 47.0 | 4.20e-01 | 93.5% | 72.2% |
| 1w23A02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.57 | 47.0 | 4.32e-01 | 93.5% | 90.3% |
| 1x4dA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 45.0 | 4.24e-01 | 92.2% | 73.5% |
| 3jcmH04 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.57 | 43.0 | 4.36e-01 | 83.1% | 88.3% |
| 2f7aA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 39.0 | 3.43e-01 | 72.7% | 76.9% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 37.0 | 3.31e-01 | 100.0% | 49.1% |
| 1bqnA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.56 | 41.0 | 3.90e-01 | 79.2% | 75.5% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.56 | 50.0 | 4.72e-01 | 98.7% | 83.0% |
| 1x9mA03 | 3.30.70.370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 44.0 | 3.44e-01 | 87.0% | 68.5% |
| 3bv8A00 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.56 | 36.0 | 3.50e-01 | 81.8% | 57.6% |
| 4ykiA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 37.0 | 3.12e-01 | 70.1% | 82.3% |
| 3oxnA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 42.0 | 3.66e-01 | 79.2% | 91.3% |
| 2ckwA03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.56 | 41.0 | 3.69e-01 | 81.8% | 74.1% |
| 1utaA00 | 3.30.70.1070 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat | 0.55 | 41.0 | 4.17e-01 | 81.8% | 80.5% |
| 2qv6B02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.55 | 42.0 | 3.70e-01 | 84.4% | 66.4% |
| 1zhvA00 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.55 | 44.0 | 3.72e-01 | 89.6% | 88.1% |
| 1s2oA02 | 3.90.1070.10 | Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › | 0.55 | 36.0 | 3.76e-01 | 74.0% | 74.6% |
| 5wjpA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 37.0 | 3.12e-01 | 71.4% | 73.2% |
| 6gvdA02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 40.0 | 2.68e-01 | 79.2% | 19.4% |
| 1s7hA02 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 44.0 | 4.31e-01 | 89.6% | 82.9% |
| 2plgA01 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.54 | 43.0 | 3.74e-01 | 92.2% | 75.8% |
| 8gccA02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.54 | 45.0 | 4.39e-01 | 94.8% | 89.5% |
| 2gqcA01 | 3.30.70.2080 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 37.0 | 4.08e-01 | 77.9% | 100.0% |
| 3d7aA01 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.54 | 44.0 | 3.70e-01 | 92.2% | 74.3% |
| 1lxjA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 41.0 | 3.76e-01 | 84.4% | 65.0% |
| 1s7hA01 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 41.0 | 4.07e-01 | 88.3% | 81.2% |
| 2nwuB01 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.53 | 42.0 | 3.64e-01 | 89.6% | 77.8% |
| 2jisA01 | 3.90.1150.170 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.53 | 42.0 | 3.10e-01 | 92.2% | 44.4% |
| 1qhoA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 39.0 | 2.56e-01 | 80.5% | 23.7% |
| 2efpA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.52 | 40.0 | 3.80e-01 | 87.0% | 70.4% |
| 1x9zA02 | 3.30.1370.100 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › MutL, C-terminal domain, regulatory subdomain | 0.51 | 38.0 | 3.68e-01 | 83.1% | 69.7% |
| 1u6gC00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.51 | 35.0 | 1.96e-01 | 72.7% | 6.8% |
| 2rdpA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 40.0 | 3.23e-01 | 81.8% | 69.3% |
| 1vk8A00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 39.0 | 3.73e-01 | 84.4% | 71.0% |
| 2cs7A00 | 3.10.50.90 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.51 | 27.0 | 3.05e-01 | 89.6% | 65.5% |
| 1lxnA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 39.0 | 3.66e-01 | 85.7% | 71.4% |
| 5koxA02 | 3.30.70.2450 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 39.0 | 3.79e-01 | 85.7% | 86.0% |
ECOD (66)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4962753 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.66 | 38.0 | 2.53e-01 | 89.6% | 15.0% |
| 4937548 | 304.54.1.0 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like | 0.64 | 44.0 | 4.93e-01 | 81.8% | 100.0% |
| 4682714 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.64 | 47.0 | 4.94e-01 | 81.8% | 87.1% |
| 4476959 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.64 | 37.0 | 2.13e-01 | 89.6% | 6.1% |
| 4217761 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.63 | 48.0 | 4.84e-01 | 84.4% | 84.8% |
| 5027824 | 304.8.1.10 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 | 0.62 | 49.0 | 4.81e-01 | 88.3% | 84.7% |
| 4938397 | 304.117.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC | 0.62 | 45.0 | 4.55e-01 | 79.2% | 78.7% |
| 3583291 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.61 | 49.0 | 4.15e-01 | 88.3% | 54.6% |
| 4938715 | 306.2.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor | 0.61 | 51.0 | 5.02e-01 | 97.4% | 85.9% |
| 5039113 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.61 | 46.0 | 4.89e-01 | 90.9% | 95.4% |
| 3613410 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.61 | 46.0 | 4.52e-01 | 85.7% | 75.3% |
| 4118694 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.60 | 46.0 | 4.67e-01 | 83.1% | 86.7% |
| 3249128 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.60 | 46.0 | 4.40e-01 | 83.1% | 71.1% |
| 3994612 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.60 | 47.0 | 4.66e-01 | 84.4% | 92.5% |
| 4647466 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.60 | 53.0 | 3.54e-01 | 100.0% | 71.1% |
| 3745161 | 4323.1.1.2 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V-ATPase_C | 0.60 | 49.0 | 4.57e-01 | 93.5% | 73.0% |
| 4297401 | 304.110.1.0 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like | 0.60 | 44.0 | 4.42e-01 | 81.8% | 81.2% |
| 4159102 | 304.14.1.0 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) | 0.60 | 44.0 | 4.56e-01 | 83.1% | 88.6% |
| 4136209 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.59 | 46.0 | 4.53e-01 | 87.0% | 87.1% |
| 3339604 | 304.9.1.47 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF4283 | 0.59 | 45.0 | 3.90e-01 | 84.4% | 54.4% |
| 3914050 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.59 | 48.0 | 4.68e-01 | 93.5% | 96.5% |
| 3376733 | 304.9.1.47 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF4283 | 0.59 | 45.0 | 4.06e-01 | 84.4% | 61.8% |
| 5046131 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 48.0 | 4.36e-01 | 87.0% | 83.0% |
| 3203597 | 101.1.2.73 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82 | 0.58 | 39.0 | 3.31e-01 | 70.1% | 96.2% |
| 3573007 | 327.11.2.79 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_1, KH_PARP14_2 | 0.58 | 45.0 | 3.71e-01 | 90.9% | 44.7% |
| 3997731 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.57 | 45.0 | 4.46e-01 | 85.7% | 83.7% |
| 5025961 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.57 | 42.0 | 4.32e-01 | 85.7% | 87.1% |
| 3795979 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.57 | 43.0 | 4.10e-01 | 83.1% | 75.8% |
| 5003991 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.57 | 37.0 | 3.67e-01 | 70.1% | 61.2% |
| 3433011 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.57 | 43.0 | 3.82e-01 | 84.4% | 61.7% |
| 4987404 | 304.20.1.4 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C | 0.57 | 42.0 | 3.30e-01 | 83.1% | 73.7% |
| 4159140 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.56 | 50.0 | 3.07e-01 | 100.0% | 86.7% |
| 5579 | 306.8.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › TM1457-like › TM1457-like › Peptidase_Prp | 0.56 | 50.0 | 4.72e-01 | 98.7% | 83.0% |
| 3164817 | 304.28.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG | 0.56 | 44.0 | 4.33e-01 | 88.3% | 84.7% |
| 3996296 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.56 | 47.0 | 4.20e-01 | 96.1% | 68.7% |
| 3181789 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.56 | 51.0 | 3.40e-01 | 100.0% | 90.5% |
| 3669120 | 304.8.1.58 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ABCA12_C | 0.56 | 43.0 | 4.29e-01 | 84.4% | 81.2% |
| 5041345 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 42.0 | 4.16e-01 | 84.4% | 78.8% |
| 4088876 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 39.0 | 2.26e-01 | 74.0% | 11.6% |
| 3394715 | 304.7.1.1 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 | 0.55 | 39.0 | 3.84e-01 | 92.2% | 68.2% |
| 4946029 | 882.1.1.0 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 | 0.55 | 47.0 | 3.96e-01 | 97.4% | 73.6% |
| 3928208 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.55 | 41.0 | 4.19e-01 | 83.1% | 84.0% |
| 5004971 | 304.28.1.38 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › CAA_C | 0.55 | 41.0 | 3.21e-01 | 81.8% | 69.4% |
| 3743247 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.55 | 50.0 | 3.23e-01 | 100.0% | 91.9% |
| 3164638 | 2006.1.1.37 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP+Hydrolase_3 | 0.55 | 40.0 | 2.84e-01 | 77.9% | 48.5% |
| 4030338 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.55 | 39.0 | 2.44e-01 | 74.0% | 29.6% |
| 3270591 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.55 | 49.0 | 3.29e-01 | 100.0% | 90.3% |
| 4624584 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.55 | 48.0 | 3.25e-01 | 100.0% | 68.1% |
| None | — | 0.55 | 49.0 | 2.85e-01 | 100.0% | 39.0% | |
| 4405736 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.55 | 48.0 | 3.24e-01 | 100.0% | 68.2% |
| 5057765 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.55 | 43.0 | 4.27e-01 | 87.0% | 87.5% |
| 5059543 | 304.20.1.4 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C | 0.54 | 40.0 | 3.14e-01 | 83.1% | 75.3% |
| 4160947 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.54 | 48.0 | 3.21e-01 | 100.0% | 68.5% |
| 3531801 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.54 | 41.0 | 3.90e-01 | 85.7% | 72.6% |
| 4094061 | 101.1.9.98 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF4004 | 0.54 | 37.0 | 3.62e-01 | 71.4% | 70.6% |
| 3719364 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.54 | 47.0 | 3.14e-01 | 100.0% | 90.5% |
| 3758608 | 320.4.1.7 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › PF26117 | 0.53 | 44.0 | 3.95e-01 | 98.7% | 65.8% |
| 3621043 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.53 | 47.0 | 4.37e-01 | 100.0% | 96.0% |
| 4155387 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.53 | 46.0 | 3.08e-01 | 100.0% | 87.8% |
| 4109850 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.52 | 47.0 | 3.15e-01 | 100.0% | 88.3% |
| 3921187 | 320.4.1.7 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › PF26117 | 0.52 | 43.0 | 3.30e-01 | 100.0% | 35.5% |
| 4947947 | 882.1.1.0 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 | 0.52 | 43.0 | 3.66e-01 | 94.8% | 75.6% |
| 5030237 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 37.0 | 3.74e-01 | 76.6% | 93.8% |
| 3596192 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.51 | 43.0 | 2.97e-01 | 96.1% | 93.1% |
| 4998543 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 39.0 | 3.53e-01 | 85.7% | 74.5% |
| 4984971 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.50 | 39.0 | 4.07e-01 | 87.0% | 95.7% |
D2
high
residues 69-130
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qgiA01 | 3.30.386.10 | Alpha Beta › 2-Layer Sandwich › Chitosanase; Chain A, domain 2 › Chitosanase, subunit A, domain 2 | 0.56 | 47.0 | 3.65e-01 | 98.4% | 64.6% |
| 2au3A02 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.54 | 37.0 | 2.97e-01 | 75.8% | 34.6% |
| 2ek5B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 38.0 | 3.21e-01 | 77.4% | 54.1% |
| 2doaA00 | 1.10.10.2670 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › E3 ubiquitin-protein ligase | 0.52 | 44.0 | 3.83e-01 | 100.0% | 63.5% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4960528 | 142.1.1.53 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › CxxCxxCC | 0.86 | 81.0 | 5.73e-01 | 100.0% | 40.5% |
| 3248457 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.52 | 41.0 | 3.76e-01 | 91.9% | 70.0% |