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IMGVR_UViG_3300018013_000326-3300018013-Ga0187873_101124714
Arc-VirIMGVR_UViG_3300018013_000326-3300018013-Ga0187873_101124714
Identity
- Kingdom:
- archaea
Quality
82.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-59
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vb5B02 | 3.40.50.10470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 | 0.64 | 50.0 | 3.54e-01 | 88.9% | 29.3% |
| 4mb7A02 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.63 | 42.0 | 3.05e-01 | 90.7% | 25.9% |
| 1hkgA01 | 1.10.287.1250 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 32.0 | 3.19e-01 | 74.1% | 42.1% |
| 1qmgB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 44.0 | 3.11e-01 | 90.7% | 25.0% |
| 1ggpA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.58 | 49.0 | 3.65e-01 | 100.0% | 43.0% |
| 3cj1A02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.56 | 42.0 | 2.76e-01 | 81.5% | 28.5% |
| 3f1yA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.56 | 46.0 | 2.91e-01 | 96.3% | 22.3% |
| 3md7A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.55 | 43.0 | 2.87e-01 | 94.4% | 50.0% |
| 4o2zA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 39.0 | 2.75e-01 | 77.8% | 31.4% |
| 3u50C01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 38.0 | 3.11e-01 | 87.0% | 95.3% |
| 1z2aA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 39.0 | 3.00e-01 | 96.3% | 40.2% |
| 2b0aA00 | 3.50.30.50 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Putative cyclase | 0.50 | 41.0 | 2.98e-01 | 100.0% | 35.5% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3604523 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 49.0 | 3.82e-01 | 77.8% | 35.0% |
| 4237550 | 2004.1.1.348 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SbcC_Walker_B | 0.67 | 56.0 | 3.87e-01 | 94.4% | 28.9% |
| 3385336 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.63 | 36.0 | 2.21e-01 | 79.6% | 10.5% |
| 3509048 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 25.0 | 2.89e-01 | 74.1% | 43.6% |
| 3224830 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.61 | 44.0 | 2.65e-01 | 79.6% | 45.4% |
| 3582376 | 2003.1.2.34 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Prenylcys_lyase | 0.59 | 46.0 | 2.93e-01 | 87.0% | 66.3% |
| 5072584 | 2003.1.5.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 | 0.58 | 43.0 | 2.77e-01 | 85.2% | 25.7% |
| 5026112 | 3457.1.1.0 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease | 0.53 | 47.0 | 3.14e-01 | 100.0% | 60.9% |
| 4014940 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 41.0 | 3.14e-01 | 98.1% | 40.6% |
| 4028610 | 101.1.2.123 ↗ | alpha arrays › HTH › HTH › winged helix domain › Paf67 | 0.53 | 40.0 | 3.20e-01 | 100.0% | 41.9% |
| 3731954 | 3008.1.1.2 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DUF5915 | 0.52 | 38.0 | 3.19e-01 | 83.3% | 57.1% |
| 3764877 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.51 | 42.0 | 2.85e-01 | 100.0% | 44.9% |
| 4019519 | 101.1.2.123 ↗ | alpha arrays › HTH › HTH › winged helix domain › Paf67 | 0.51 | 36.0 | 3.04e-01 | 79.6% | 68.6% |
| 4935046 | 2004.1.1.97 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB | 0.51 | 41.0 | 3.16e-01 | 92.6% | 44.6% |
| 3813779 | 7015.1.1.1 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC | 0.50 | 42.0 | 2.75e-01 | 100.0% | 60.4% |
| 3683513 | 207.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1 | 0.50 | 41.0 | 3.14e-01 | 100.0% | 63.5% |