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IMGVR_UViG_3300018013_000490-3300018013-Ga0187873_100144028

Arc-Vir

IMGVR_UViG_3300018013_000490-3300018013-Ga0187873_100144028

Identity

Kingdom:
archaea

Quality

59.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 300-608
PDB
Domain cluster: rep: IMGVR_UViG_3300002223_000396-3300002223-C687J26845_100030599__D39-297
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4acyA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.77 75.0 7.19e-01 100.0% 97.4%
5vakA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.67 63.0 5.56e-01 100.0% 95.2%
1rh9A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.65 62.0 5.77e-01 100.0% 94.3%
1bf2A02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.64 60.0 5.15e-01 100.0% 94.7%
4j7rA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.63 60.0 5.00e-01 100.0% 93.8%
2fhfA04 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.63 60.0 4.80e-01 100.0% 92.1%
1ad1A00 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.63 50.0 5.42e-01 100.0% 94.7%
5kinC00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.63 47.0 5.19e-01 99.7% 92.5%
3kw2B02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.63 34.0 4.60e-01 100.0% 96.5%
5vanA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.63 59.0 5.30e-01 100.0% 96.4%
1myrA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.63 58.0 4.94e-01 100.0% 94.4%
2j62A02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.62 53.0 5.27e-01 100.0% 86.1%
8d89A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.62 59.0 5.47e-01 99.7% 87.4%
2eplX02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.61 57.0 5.71e-01 99.4% 97.7%
1a0cA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.61 57.0 5.01e-01 99.4% 75.3%
1jcjA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 45.0 5.00e-01 97.7% 94.0%
2ze3A01 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.60 38.0 4.40e-01 88.3% 84.1%
3k8kA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.60 50.0 4.78e-01 86.7% 86.8%
1eswA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.59 56.0 4.70e-01 100.0% 98.8%
8hi7B01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.59 52.0 5.39e-01 100.0% 99.6%
4wnyA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 26.0 3.99e-01 73.1% 97.0%
3cg4A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 26.0 3.94e-01 99.7% 97.6%
5m99A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.59 56.0 5.32e-01 100.0% 98.3%
3r7wA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 35.0 4.43e-01 85.8% 98.4%
2hisA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.58 54.0 5.39e-01 99.4% 95.8%
3eywB02 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.58 34.0 4.38e-01 86.7% 98.9%
4psrA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 54.0 5.08e-01 100.0% 93.5%
4ovxA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.57 47.0 4.98e-01 85.4% 98.9%
2qhaA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 52.0 5.11e-01 100.0% 90.2%
8sp0A01 3.40.50.10140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain 0.55 29.0 3.96e-01 93.9% 98.7%
1fobA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 51.0 4.96e-01 99.4% 99.1%
3h8lA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 27.0 3.74e-01 88.7% 94.0%
2fiqA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 46.0 4.75e-01 100.0% 95.1%
2ehdA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 35.0 4.15e-01 87.1% 94.2%
2fwmX00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 34.0 4.05e-01 87.1% 91.0%
2ielA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 24.0 3.68e-01 92.6% 99.2%
7exfA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 49.0 4.95e-01 98.1% 97.1%
4is2A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 34.0 3.98e-01 87.1% 93.9%
3rkrA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 34.0 3.98e-01 86.7% 92.3%
3gemD00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 33.0 3.92e-01 86.7% 92.5%
3p19B00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 34.0 3.95e-01 87.1% 93.1%
4id9A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 34.0 4.08e-01 71.5% 98.6%
4emyA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.51 31.0 3.50e-01 83.8% 76.5%
3edmD00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 33.0 3.89e-01 87.1% 93.9%
3o38B01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 34.0 3.90e-01 87.1% 89.8%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3628646 2002.1.1.185 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_99 0.79 76.0 6.93e-01 100.0% 93.1%
3507577 2002.1.1.185 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_99 0.79 76.0 7.12e-01 100.0% 93.4%
3497166 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.78 76.0 6.86e-01 100.0% 92.2%
4421552 2002.1.1.349 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_tran_WbsX 0.76 74.0 6.64e-01 100.0% 86.8%
4972758 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.74 72.0 6.97e-01 100.0% 95.8%
3841798 2002.1.1.12 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 0.67 63.0 5.39e-01 100.0% 92.8%
4934769 2002.1.1.15 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Trp_syntA 0.64 49.0 5.38e-01 100.0% 94.9%
3306686 2002.1.1.19 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_17 0.62 36.0 4.26e-01 80.3% 81.9%
4664632 2002.1.1.15 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Trp_syntA 0.61 47.0 5.18e-01 100.0% 95.7%
5036322 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.60 51.0 5.39e-01 98.1% 99.3%
5049899 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.58 40.0 4.64e-01 76.7% 97.7%
5051054 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.57 38.0 4.31e-01 100.0% 86.8%
4994125 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.56 46.0 4.99e-01 85.4% 99.6%
3447867 2002.1.1.19 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_17 0.56 52.0 4.87e-01 99.0% 93.0%
3972136 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.56 43.0 4.66e-01 92.9% 95.3%
4173609 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.55 42.0 4.43e-01 95.1% 87.6%
4443988 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.55 46.0 4.60e-01 88.0% 95.0%
4260297 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.54 45.0 4.70e-01 88.0% 94.5%
4635042 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.54 45.0 4.69e-01 88.0% 95.0%
5076653 2007.3.1.6 ↗ a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA_2 0.54 31.0 4.00e-01 100.0% 96.1%
4373333 2002.1.1.136 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF692 0.54 42.0 4.39e-01 79.9% 96.1%
3298113 2002.1.1.19 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_17 0.53 47.0 4.79e-01 99.0% 93.9%
4381207 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.53 44.0 4.62e-01 88.0% 94.5%
4164604 246.2.1.7 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B 0.52 40.0 3.93e-01 99.7% 72.2%
4386896 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.52 44.0 4.53e-01 90.0% 93.8%
4999420 2003.1.1.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.52 39.0 3.72e-01 77.0% 98.9%
3654480 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.52 47.0 4.65e-01 96.4% 99.4%
5037698 2002.1.1.87 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Melibiase 0.52 49.0 4.81e-01 100.0% 95.4%
3326501 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.51 46.0 4.66e-01 96.4% 98.7%
3396061 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.51 47.0 4.65e-01 99.4% 96.3%
4945392 2002.1.1.50 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › F_bP_aldolase 0.51 47.0 4.39e-01 100.0% 81.3%
3583975 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.51 34.0 3.62e-01 87.1% 76.2%
D2 medium residues 1-115
PDB