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IMGVR_UViG_3300018023_000586-3300018023-Ga0187889_100058001
Arc-VirIMGVR_UViG_3300018023_000586-3300018023-Ga0187889_100058001
Identity
- Kingdom:
- archaea
Quality
84.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-155
Domain cluster:
rep: IMGVR_UViG_2918192969_000001-2918192969-2918194533__D27-210
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3s1sA01 | 3.90.1570.30 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.69 | 64.0 | 6.19e-01 | 98.7% | 96.4% |
| 3noyB02 | 3.30.413.10 | Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 | 0.66 | 36.0 | 4.36e-01 | 83.7% | 83.2% |
| 3h1tA01 | 3.90.1570.30 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.63 | 51.0 | 5.40e-01 | 86.9% | 95.6% |
| 2w00A01 | 3.90.1570.50 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.59 | 55.0 | 5.30e-01 | 100.0% | 93.0% |
| 6g62A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.59 | 33.0 | 3.71e-01 | 90.8% | 70.4% |
| 3d5lB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 23.0 | 2.83e-01 | 84.3% | 53.9% |
| 3mixA01 | 3.40.30.60 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 | 0.55 | 32.0 | 3.58e-01 | 90.2% | 71.7% |
| 3dlaB01 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.55 | 47.0 | 3.72e-01 | 93.5% | 80.7% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.55 | 30.0 | 3.91e-01 | 99.3% | 100.0% |
| 3d6iA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 30.0 | 3.45e-01 | 88.2% | 73.6% |
| 2d0oB00 | 3.40.50.10150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › B12-dependent dehydatase associated subunit | 0.52 | 33.0 | 3.77e-01 | 84.3% | 87.0% |
| 5ysqB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 43.0 | 3.54e-01 | 91.5% | 84.3% |
| 4bpzA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 40.0 | 3.46e-01 | 85.0% | 83.7% |
| 2ph7A02 | 3.40.50.10670 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › af2093 domain | 0.51 | 31.0 | 3.76e-01 | 75.2% | 96.9% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3838862 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.88 | 81.0 | 8.10e-01 | 96.1% | 100.0% |
| 3387933 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.75 | 71.0 | 6.32e-01 | 100.0% | 83.3% |
| 5012636 | 2008.1.1.15 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N | 0.73 | 67.0 | 6.24e-01 | 98.0% | 82.5% |
| 5042118 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.72 | 67.0 | 6.69e-01 | 98.7% | 100.0% |
| 4941120 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.71 | 66.0 | 6.40e-01 | 100.0% | 92.9% |
| 4950293 | 2008.1.1.15 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N | 0.71 | 64.0 | 5.99e-01 | 96.1% | 93.0% |
| 4995692 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.70 | 49.0 | 5.35e-01 | 86.9% | 85.4% |
| 4150492 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.69 | 64.0 | 5.48e-01 | 100.0% | 78.8% |
| 4608919 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.68 | 61.0 | 5.25e-01 | 98.7% | 97.9% |
| 4620053 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.67 | 46.0 | 4.36e-01 | 86.3% | 60.0% |
| 4336609 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.67 | 45.0 | 4.98e-01 | 86.3% | 85.4% |
| 5018509 | 2008.1.1.15 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N | 0.66 | 55.0 | 4.56e-01 | 86.9% | 98.0% |
| 4944802 | 2008.1.1.15 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N | 0.66 | 54.0 | 4.47e-01 | 86.9% | 94.7% |
| 5004431 | 2008.1.1.15 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N | 0.66 | 55.0 | 4.67e-01 | 88.2% | 98.3% |
| 3164196 | 2008.1.1.15 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N | 0.65 | 53.0 | 4.50e-01 | 86.3% | 99.6% |
| 5080826 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.65 | 51.0 | 5.26e-01 | 85.0% | 86.2% |
| 4935477 | 2008.1.1.15 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N | 0.65 | 52.0 | 4.48e-01 | 83.7% | 98.7% |
| 3283255 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 40.0 | 4.93e-01 | 78.4% | 98.9% |
| 3988610 | 2008.1.1.15 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N | 0.64 | 49.0 | 5.33e-01 | 86.9% | 93.8% |
| 4937821 | 2008.1.1.15 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N | 0.64 | 53.0 | 4.38e-01 | 87.6% | 98.5% |
| 4930109 | 2008.1.1.15 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N | 0.64 | 51.0 | 4.26e-01 | 83.7% | 98.5% |
| 3965312 | 2008.1.1.15 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N | 0.64 | 53.0 | 4.48e-01 | 86.9% | 98.4% |
| 4042520 | 2008.1.1.15 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N | 0.64 | 51.0 | 4.50e-01 | 83.7% | 98.2% |
| 4928308 | 2004.1.1.220 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 | 0.63 | 50.0 | 3.60e-01 | 83.7% | 53.2% |
| 2439579 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.63 | 58.0 | 4.61e-01 | 100.0% | 70.9% |
| 3602420 | 2008.1.1.15 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N | 0.63 | 55.0 | 4.49e-01 | 94.8% | 97.5% |
| 1166895 | 2008.1.1.100 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N_2 | 0.63 | 51.0 | 5.14e-01 | 86.9% | 85.1% |
| 4177916 | 2008.1.1.20 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 | 0.63 | 51.0 | 5.03e-01 | 86.3% | 82.4% |
| 4058896 | 296.1.1.3 ↗ | a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 | 0.63 | 35.0 | 4.07e-01 | 85.0% | 77.1% |
| 3988984 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.62 | 53.0 | 5.29e-01 | 92.2% | 86.9% |
| 4077601 | 296.1.1.3 ↗ | a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 | 0.62 | 35.0 | 4.07e-01 | 85.0% | 77.9% |
| 4128260 | 296.1.1.3 ↗ | a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 | 0.62 | 35.0 | 4.26e-01 | 85.0% | 88.9% |
| 4443103 | 296.1.1.3 ↗ | a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 | 0.62 | 35.0 | 4.06e-01 | 85.6% | 75.5% |
| 4316823 | 296.1.1.3 ↗ | a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 | 0.62 | 35.0 | 3.88e-01 | 85.6% | 68.6% |
| 4932253 | 2008.1.1.100 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N_2 | 0.62 | 50.0 | 5.11e-01 | 85.0% | 97.2% |
| 4964241 | 2008.1.1.162 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30170 | 0.62 | 50.0 | 5.13e-01 | 85.6% | 89.0% |
| 4467857 | 296.1.1.3 ↗ | a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 | 0.61 | 37.0 | 4.37e-01 | 83.0% | 89.0% |
| 3958912 | 296.1.1.0 ↗ | a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | 0.61 | 35.0 | 4.13e-01 | 85.0% | 83.0% |
| 5019936 | 2008.1.1.162 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30170 | 0.61 | 51.0 | 5.24e-01 | 89.5% | 90.7% |
| 4953503 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.61 | 48.0 | 4.36e-01 | 86.3% | 62.5% |
| 4643516 | 2008.1.1.15 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N | 0.61 | 50.0 | 5.05e-01 | 88.2% | 86.5% |
| 4137732 | 2008.1.1.100 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N_2 | 0.61 | 48.0 | 4.91e-01 | 83.7% | 87.3% |
| 3943011 | 2008.1.1.15 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N | 0.60 | 43.0 | 4.16e-01 | 73.2% | 74.7% |
| 4665982 | 296.1.1.0 ↗ | a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | 0.59 | 33.0 | 3.86e-01 | 85.0% | 80.0% |
| 4033074 | 2008.1.1.83 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF1064 | 0.58 | 42.0 | 4.56e-01 | 80.4% | 87.6% |
| 5056835 | 2008.1.1.114 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 | 0.58 | 40.0 | 4.63e-01 | 77.1% | 100.0% |
| 3604592 | 2008.1.1.15 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N | 0.57 | 41.0 | 3.95e-01 | 73.9% | 73.1% |
| 3277900 | 3105.1.1.3 ↗ | a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › DUF6676 | 0.57 | 38.0 | 4.19e-01 | 84.3% | 85.0% |
| 1175500 | 2003.1.9.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF | 0.56 | 44.0 | 3.81e-01 | 83.7% | 78.8% |
| 5042738 | 2003.6.1.13 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Khk | 0.52 | 44.0 | 3.44e-01 | 92.2% | 97.2% |
| 5036136 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.52 | 40.0 | 3.36e-01 | 83.0% | 94.4% |
D2
high
residues 164-348
Domain cluster:
rep: SR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00165__D256-403
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02384.23 best | N6_Mtase | 22.0 | 1.30e-04 | 23.8% | 13.2% |