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IMGVR_UViG_3300018025_000245-3300018025-Ga0187885_1000935217

Arc-Vir

IMGVR_UViG_3300018025_000245-3300018025-Ga0187885_1000935217

Identity

Kingdom:
archaea

Quality

81.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-53
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2co9A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.89 62.0 4.83e-01 73.1% 37.3%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.81 58.0 4.08e-01 75.0% 29.5%
5oklA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.77 70.0 5.55e-01 100.0% 88.1%
1j78A05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.77 66.0 6.29e-01 92.3% 100.0%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.77 55.0 4.79e-01 76.9% 50.6%
4ixjA01 3.30.1300.80 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.76 52.0 4.61e-01 86.5% 49.4%
1wgfA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.74 54.0 5.41e-01 78.8% 77.4%
6fakA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.74 64.0 5.30e-01 100.0% 93.7%
1kxpD01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.72 65.0 5.47e-01 100.0% 84.9%
1kxpD03 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.72 62.0 5.25e-01 98.1% 100.0%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 48.0 4.74e-01 71.2% 69.6%
1nrwA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.71 62.0 4.51e-01 94.2% 66.9%
3fixA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.69 58.0 4.20e-01 100.0% 71.5%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.68 59.0 5.05e-01 100.0% 73.3%
4qdnA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.67 54.0 4.35e-01 98.1% 61.0%
2di0A01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.65 47.0 4.94e-01 94.2% 91.3%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.64 55.0 4.96e-01 96.2% 81.7%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 51.0 4.46e-01 100.0% 57.3%
2y1eA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.64 54.0 4.65e-01 98.1% 86.2%
1kl7A02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 53.0 3.43e-01 96.2% 40.5%
4ye6A01 1.10.8.1290 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 0.64 53.0 4.39e-01 100.0% 51.0%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.64 54.0 4.68e-01 100.0% 78.8%
5jazA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.63 53.0 4.50e-01 98.1% 80.2%
2o7gA00 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.62 50.0 4.41e-01 100.0% 71.6%
3egoA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.60 50.0 3.98e-01 100.0% 54.5%
2z4sA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 51.0 4.65e-01 100.0% 80.6%
1lp1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.59 46.0 4.56e-01 100.0% 89.1%
3d8bB02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.58 47.0 4.21e-01 100.0% 85.4%
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 4.47e-01 88.5% 89.1%
4gxbA02 1.20.80.60 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.58 42.0 4.06e-01 86.5% 67.7%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 47.0 4.07e-01 96.2% 58.6%
1gnlA01 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 45.0 3.34e-01 88.5% 52.5%
6h7bA01 1.10.1900.10 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein 0.56 46.0 4.25e-01 100.0% 75.7%
5e37A02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 42.0 3.67e-01 96.2% 98.8%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.52 40.0 3.62e-01 100.0% 84.1%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3235805 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.90 62.0 7.02e-01 71.2% 95.0%
4543805 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.90 63.0 4.55e-01 73.1% 32.6%
3471257 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.89 62.0 4.71e-01 73.1% 34.5%
3238821 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.88 61.0 5.10e-01 73.1% 44.7%
3538509 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.88 61.0 4.74e-01 73.1% 36.2%
3506153 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.87 61.0 5.12e-01 73.1% 45.8%
3924147 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.86 63.0 5.12e-01 76.9% 44.4%
3323406 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.85 62.0 3.99e-01 78.8% 19.0%
4102250 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.84 61.0 5.21e-01 78.8% 50.0%
4430375 194.1.1.1 ↗ alpha complex topology › Serum albumin-like › Serum albumin-like › Serum albumin-like › Serum_albumin 0.81 73.0 4.88e-01 100.0% 43.6%
3398172 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.81 60.0 4.68e-01 78.8% 39.0%
3885705 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.80 58.0 4.87e-01 76.9% 48.2%
4237384 171.1.1.4 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.78 68.0 4.90e-01 98.1% 73.8%
3260615 103.4.1.5 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.77 66.0 5.69e-01 100.0% 74.1%
5051912 632.3.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain 0.77 66.0 6.16e-01 100.0% 78.5%
4495994 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.76 65.0 4.05e-01 92.3% 24.4%
3744100 171.1.1.1 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.76 68.0 4.76e-01 100.0% 66.3%
3883598 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.75 64.0 5.78e-01 94.2% 92.9%
3835593 171.1.1.1 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.74 60.0 4.18e-01 92.3% 69.4%
3711396 148.1.3.179 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_BCS1 0.74 60.0 5.05e-01 92.3% 54.1%
4016806 101.1.10.60 ↗ alpha arrays › HTH › HTH › Cyclin-like › DUF2293 0.72 63.0 5.04e-01 100.0% 95.2%
3786647 592.6.1.1 ↗ alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.72 61.0 5.37e-01 98.1% 72.5%
3723363 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.71 60.0 5.12e-01 100.0% 61.1%
4015166 142.1.1.34 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › DUF2293 0.70 62.0 5.01e-01 100.0% 100.0%
3632865 327.11.2.69 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › DUF2293 0.70 61.0 5.05e-01 100.0% 96.8%
3928496 143.1.1.0 ↗ alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain 0.69 60.0 5.75e-01 100.0% 85.0%
3926533 143.1.1.0 ↗ alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain 0.69 60.0 5.95e-01 98.1% 94.5%
3961399 632.3.1.6 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › OmdA 0.68 53.0 5.28e-01 86.5% 96.4%
185159 3552.1.1.1 ↗ alpha arrays › Pfam family PF09836 N-terminal domain › Pfam family PF09836 N-terminal domain › Pfam family PF09836 N-terminal domain › DUF2063 0.68 59.0 4.99e-01 100.0% 70.8%
4457750 3567.1.1.112 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › AI-2E_transport 0.68 57.0 4.62e-01 100.0% 53.6%
3977558 639.2.1.3 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › BDM 0.67 47.0 4.62e-01 76.9% 69.1%
3293474 143.1.1.1 ↗ alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain › PABP 0.67 56.0 4.97e-01 94.2% 69.3%
5028154 3831.1.1.0 ↗ alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 0.66 55.0 4.30e-01 100.0% 65.6%
4206569 4125.1.1.2 ↗ alpha superhelices › BH3980-like › BH3980-like › BH3980-like › HAAS 0.65 53.0 4.88e-01 100.0% 93.3%
5058810 159.1.2.35 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › HAAS 0.64 52.0 4.78e-01 92.3% 94.3%
3728552 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.63 53.0 4.22e-01 100.0% 68.7%
4494528 632.2.1.40 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF515 0.63 52.0 5.15e-01 100.0% 96.4%
3690980 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.62 49.0 4.02e-01 92.3% 60.0%
3989224 4125.1.1.2 ↗ alpha superhelices › BH3980-like › BH3980-like › BH3980-like › HAAS 0.62 49.0 4.66e-01 92.3% 83.1%
4297295 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.61 54.0 4.78e-01 100.0% 85.3%
3705429 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.61 47.0 4.14e-01 94.2% 62.2%
4361639 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.60 50.0 4.44e-01 98.1% 68.4%
4547686 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.60 45.0 4.08e-01 92.3% 60.0%
4020971 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 44.0 2.81e-01 80.8% 33.1%
3593232 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.57 48.0 4.20e-01 100.0% 96.5%
4999401 4995.1.1.0 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like 0.55 44.0 3.97e-01 100.0% 81.2%
5060252 632.23.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I 0.53 45.0 3.89e-01 100.0% 81.2%