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IMGVR_UViG_3300018025_000274-3300018025-Ga0187885_1000115113
Arc-VirIMGVR_UViG_3300018025_000274-3300018025-Ga0187885_1000115113
Identity
- Kingdom:
- archaea
Quality
68.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-205_516-560
Domain cluster:
rep: DNA_methyltransferase__YP_010087928__Lymphocystis_disease_virus_4__2704413__D2-227
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00145.24 best | DNA_methylase | 88.9 | 6.30e-25 | 81.8% | 54.6% |
| PF00145.24 | DNA_methylase | 33.2 | 5.70e-08 | 18.6% | 13.0% |
D2
medium
residues 232-292
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vx8A01 | 3.40.140.100 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 C-terminal domain | 0.66 | 56.0 | 4.34e-01 | 96.7% | 41.8% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.63 | 53.0 | 3.67e-01 | 100.0% | 67.4% |
| 5cw3C01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.62 | 52.0 | 4.04e-01 | 98.4% | 59.2% |
| 3zq5A03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.58 | 49.0 | 3.78e-01 | 98.4% | 92.8% |
| 4u3vA00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.56 | 46.0 | 3.17e-01 | 96.7% | 71.1% |
| 3bjnA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.55 | 37.0 | 2.83e-01 | 95.1% | 27.2% |
| 2lxxA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.55 | 45.0 | 3.56e-01 | 100.0% | 99.3% |
| 1jqlA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.54 | 44.0 | 3.63e-01 | 93.4% | 52.9% |
| 1hqz800 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.54 | 42.0 | 3.47e-01 | 95.1% | 83.3% |
| 6j8yA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.54 | 45.0 | 3.00e-01 | 96.7% | 29.2% |
| 1f94A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.53 | 39.0 | 3.88e-01 | 80.3% | 90.5% |
| 4h32A02 | 3.90.209.20 | Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain | 0.53 | 40.0 | 2.92e-01 | 90.2% | 73.2% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3484916 | 3351.1.1.1 ↗ | a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N | 0.66 | 53.0 | 4.20e-01 | 98.4% | 42.3% |
| 3225453 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.65 | 50.0 | 4.88e-01 | 98.4% | 75.7% |
| 3665558 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.63 | 50.0 | 4.60e-01 | 88.5% | 67.9% |
| 3928623 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.61 | 48.0 | 4.46e-01 | 86.9% | 70.9% |
| 3794765 | 864.1.1.3 ↗ | a+b two layers › DLC › DLC › DLC › Ground-like | 0.61 | 42.0 | 4.01e-01 | 96.7% | 60.0% |
| 3435107 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.61 | 48.0 | 4.36e-01 | 91.8% | 63.5% |
| 3441467 | 390.1.1.6 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_2 | 0.60 | 47.0 | 4.29e-01 | 95.1% | 63.5% |
| 3363778 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.59 | 46.0 | 4.82e-01 | 93.4% | 98.2% |
| 3227877 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.58 | 46.0 | 4.13e-01 | 86.9% | 69.4% |
| 3412152 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.56 | 47.0 | 3.72e-01 | 96.7% | 57.8% |
| 3223192 | 390.1.1.7 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3 | 0.56 | 41.0 | 3.95e-01 | 90.2% | 68.0% |
| 3798355 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.55 | 45.0 | 3.55e-01 | 95.1% | 53.6% |
| 3503502 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.55 | 46.0 | 3.65e-01 | 96.7% | 60.8% |
| 1088178 | 1.1.5.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C | 0.54 | 37.0 | 2.65e-01 | 72.1% | 70.5% |
| 4233833 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.52 | 35.0 | 2.16e-01 | 70.5% | 10.1% |
| 3238302 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.52 | 43.0 | 3.25e-01 | 100.0% | 76.6% |
| 3176699 | 148.1.3.27 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_10 | 0.52 | 35.0 | 2.87e-01 | 72.1% | 41.6% |
| 3267247 | 11.1.1.843 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 | 0.51 | 38.0 | 3.12e-01 | 88.5% | 85.7% |
| 3239006 | 223.1.1.69 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › VWA_N | 0.51 | 42.0 | 3.17e-01 | 95.1% | 73.8% |
| 3477039 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.51 | 40.0 | 3.32e-01 | 96.7% | 81.5% |
| 3764634 | 198.1.1.4 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 | 0.51 | 40.0 | 3.20e-01 | 95.1% | 71.3% |
| 3683309 | 10.32.1.195 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PAAT-like | 0.51 | 35.0 | 2.79e-01 | 77.0% | 100.0% |
| 3410856 | 11.2.1.38 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › Bfc | 0.50 | 43.0 | 3.28e-01 | 100.0% | 52.9% |