←Back to structures
IMGVR_UViG_3300018061_000029-3300018061-Ga0184619_100078663
Arc-VirIMGVR_UViG_3300018061_000029-3300018061-Ga0184619_100078663
Identity
- Kingdom:
- archaea
Quality
66.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-66
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1t6aA02 | 3.30.310.120 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein | 0.81 | 43.0 | 3.50e-01 | 100.0% | 29.5% |
| 3gxwC00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.72 | 40.0 | 3.01e-01 | 97.8% | 25.0% |
| 4bqqB02 | 3.90.1750.20 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 | 0.71 | 50.0 | 3.28e-01 | 84.4% | 17.9% |
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.67 | 44.0 | 3.54e-01 | 73.3% | 34.4% |
| 2fggA01 | 3.30.160.240 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 | 0.66 | 43.0 | 3.62e-01 | 80.0% | 40.0% |
| 4mtnA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.65 | 39.0 | 3.07e-01 | 97.8% | 27.4% |
| 1j2vA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 45.0 | 3.45e-01 | 73.3% | 69.3% |
| 6gdxA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 44.0 | 3.34e-01 | 73.3% | 67.3% |
| 2hv2A01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.63 | 42.0 | 3.34e-01 | 71.1% | 31.6% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 42.0 | 3.35e-01 | 71.1% | 75.8% |
| 3regA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 40.0 | 2.73e-01 | 71.1% | 17.5% |
| 2ddmB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.61 | 44.0 | 2.76e-01 | 100.0% | 13.3% |
| 4d10F01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.57 | 46.0 | 3.22e-01 | 97.8% | 92.2% |
| 2znhA03 | 6.20.40.10 | Special › Other non-globular › Porin MspA ribbon fold › | 0.56 | 38.0 | 3.85e-01 | 82.2% | 70.2% |
| 1k8kA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.55 | 36.0 | 2.96e-01 | 100.0% | 31.5% |
| 1t17A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 42.0 | 2.93e-01 | 84.4% | 80.4% |
| 4hqnA01 | 2.20.100.10 | Mainly Beta › Single Sheet › TSP-1 type 1 repeat › Thrombospondin type-1 (TSP1) repeat | 0.55 | 44.0 | 4.07e-01 | 100.0% | 95.4% |
| 2qm4A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.53 | 40.0 | 2.99e-01 | 91.1% | 67.8% |
| 2wxfA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 45.0 | 3.33e-01 | 97.8% | 42.9% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 44.0 | 3.09e-01 | 100.0% | 31.3% |
| 1mhxA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 40.0 | 3.49e-01 | 82.2% | 69.2% |
| 4lm6A00 | 3.90.510.10 | Alpha Beta › Alpha-Beta Complex › Cryptophytan Phycoerythrin (Alpha-1 Chain); Chain A › Phycoerythrin alpha chain | 0.51 | 40.0 | 3.77e-01 | 100.0% | 79.0% |
| 3qjlA02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 37.0 | 2.81e-01 | 80.0% | 95.8% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4444422 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.87 | 43.0 | 3.04e-01 | 100.0% | 17.9% |
| 5045252 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.83 | 43.0 | 3.24e-01 | 100.0% | 23.0% |
| 1234289 | 283.1.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 | 0.80 | 41.0 | 2.74e-01 | 100.0% | 14.5% |
| 5047179 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.78 | 41.0 | 2.43e-01 | 100.0% | 7.9% |
| 4886985 | 7523.1.1.16 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › DctP | 0.77 | 42.0 | 3.00e-01 | 100.0% | 19.2% |
| 3265334 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.74 | 38.0 | 2.83e-01 | 95.6% | 20.0% |
| 3705541 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.72 | 49.0 | 3.74e-01 | 77.8% | 32.0% |
| 1153578 | 75.1.1.1 ↗ | beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Pro_isomerase | 0.66 | 48.0 | 4.12e-01 | 77.8% | 50.0% |
| 5039979 | 604.2.1.1 ↗ | alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C | 0.66 | 47.0 | 3.33e-01 | 80.0% | 25.2% |
| 4054500 | 601.7.1.40 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas13a_C | 0.62 | 51.0 | 2.87e-01 | 93.3% | 16.0% |
| 3586391 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.62 | 45.0 | 2.84e-01 | 100.0% | 12.9% |
| 3825435 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.61 | 49.0 | 3.26e-01 | 86.7% | 32.7% |
| 3937747 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.61 | 51.0 | 3.14e-01 | 97.8% | 95.3% |
| 5049119 | 221.10.1.1 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ | 0.60 | 43.0 | 3.65e-01 | 80.0% | 89.4% |
| 3994884 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.60 | 46.0 | 2.88e-01 | 97.8% | 13.5% |
| 3491344 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 50.0 | 4.20e-01 | 100.0% | 53.6% |
| 5037750 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.60 | 40.0 | 2.69e-01 | 73.3% | 15.9% |
| 3905302 | 284.1.3.8 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › Fy-3 | 0.58 | 47.0 | 3.83e-01 | 91.1% | 80.0% |
| 3744519 | 101.1.2.535 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25889 | 0.57 | 46.0 | 3.29e-01 | 97.8% | 38.7% |
| 3740226 | 5051.1.1.7 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Nramp | 0.57 | 44.0 | 2.64e-01 | 100.0% | 11.5% |
| 4373945 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.57 | 39.0 | 2.60e-01 | 80.0% | 15.5% |
| 3774738 | 7529.1.1.11 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › DUF2362 | 0.57 | 48.0 | 3.96e-01 | 97.8% | 84.7% |
| 3481547 | 101.1.2.68 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 | 0.56 | 44.0 | 3.26e-01 | 100.0% | 30.0% |
| 3560901 | 601.19.1.20 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Fy-3 | 0.56 | 49.0 | 4.13e-01 | 100.0% | 96.0% |
| 3857887 | 5094.1.1.11 ↗ | a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › Fy-3 | 0.56 | 48.0 | 4.12e-01 | 100.0% | 96.0% |
| 5006770 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.56 | 45.0 | 3.03e-01 | 86.7% | 58.7% |
| 4282782 | 221.10.1.1 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ | 0.56 | 38.0 | 3.35e-01 | 80.0% | 89.4% |
| 4213219 | 109.21.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain | 0.55 | 45.0 | 2.48e-01 | 91.1% | 37.3% |
| 4951473 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.55 | 39.0 | 3.55e-01 | 77.8% | 96.8% |
| 3168582 | 3771.1.1.1 ↗ | a+b two layers › Central kinetochore subunit CHL4 C-terminal domain › Central kinetochore subunit CHL4 C-terminal domain › Central kinetochore subunit CHL4 C-terminal domain › CENP-N | 0.55 | 39.0 | 3.42e-01 | 77.8% | 74.3% |
| 4120507 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.55 | 44.0 | 3.45e-01 | 95.6% | 42.1% |
| 5049862 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 42.0 | 2.89e-01 | 88.9% | 87.4% |
| 4047331 | 221.10.1.1 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ | 0.55 | 38.0 | 3.16e-01 | 77.8% | 74.0% |
| 3900025 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.54 | 43.0 | 3.91e-01 | 100.0% | 64.3% |
| 4931277 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.53 | 42.0 | 2.82e-01 | 100.0% | 24.5% |
| 4803119 | 304.5.1.3 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 | 0.53 | 40.0 | 3.19e-01 | 86.7% | 91.3% |
| 3982740 | 5086.1.1.190 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › OEP | 0.53 | 41.0 | 2.87e-01 | 100.0% | 26.0% |
| 3993949 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.53 | 33.0 | 3.39e-01 | 86.7% | 60.0% |
| 3580898 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.53 | 45.0 | 3.04e-01 | 93.3% | 63.7% |
| 4027196 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 44.0 | 3.47e-01 | 100.0% | 54.0% |
| 3236416 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.51 | 45.0 | 2.66e-01 | 100.0% | 33.6% |
| 1665018 | 298.1.1.6 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › G6PD_C | 0.51 | 40.0 | 2.48e-01 | 93.3% | 16.3% |
| 5056727 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.51 | 36.0 | 2.51e-01 | 86.7% | 18.0% |