←Back to structures

IMGVR_UViG_3300018069_000019-3300018069-Ga0192660_1111259

Arc-Vir

IMGVR_UViG_3300018069_000019-3300018069-Ga0192660_1111259

Identity

Kingdom:
archaea

Quality

83.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-83
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ky8A00 3.30.890.10 Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A 0.61 35.0 3.56e-01 80.8% 57.1%
1v29B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 3.83e-01 89.0% 62.9%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.54 36.0 3.81e-01 71.2% 81.0%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 38.0 3.76e-01 75.3% 71.1%
4g3wA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 39.0 3.16e-01 87.7% 43.8%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3785193 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.63 42.0 3.68e-01 82.2% 46.7%
3441832 109.2.1.31 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_100 0.54 39.0 2.46e-01 79.5% 16.5%
3484620 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 41.0 3.87e-01 98.6% 65.3%
1512997 825.1.1.0 ↗ beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins 0.51 40.0 3.08e-01 84.9% 65.1%
3592075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 33.0 3.22e-01 90.4% 58.8%
3287478 223.1.1.26 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_3 0.50 35.0 2.72e-01 87.7% 31.4%
D2 high residues 94-186
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4iluA02 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.73 48.0 4.49e-01 97.8% 55.9%
5xfaA04 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.62 40.0 4.13e-01 75.3% 70.6%
4hteA03 1.10.167.30 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › 0.61 38.0 4.02e-01 95.7% 71.2%
3rauA00 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.59 44.0 2.95e-01 77.4% 35.8%
4cruB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.55 45.0 3.25e-01 88.2% 61.1%
3zheC01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 43.0 3.47e-01 83.9% 89.1%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.55 48.0 4.43e-01 95.7% 83.8%
3ihvA03 1.25.40.900 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 44.0 3.92e-01 91.4% 79.1%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.53 40.0 4.13e-01 91.4% 87.1%
3w8hB00 1.10.12.70 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › 0.53 27.0 3.12e-01 94.6% 68.2%
3i2fA02 1.10.3020.10 Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) 0.53 32.0 3.20e-01 81.7% 58.9%
4j8sA00 1.25.40.840 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › CCR4-NOT transcription complex subunit 1 TTP binding domain 0.52 41.0 3.37e-01 86.0% 59.4%
2dnxA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 39.0 3.50e-01 79.6% 80.0%
4hkaA01 1.20.58.480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 40.0 2.90e-01 87.1% 41.2%
5z7qA00 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.51 44.0 3.57e-01 95.7% 66.5%
1n4kA02 1.25.10.30 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain 0.51 44.0 3.77e-01 95.7% 76.4%
1f2eA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 41.0 3.92e-01 88.2% 85.8%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5030987 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.65 44.0 4.71e-01 96.8% 80.0%
3925930 604.6.1.1 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.63 44.0 4.35e-01 73.1% 85.0%
3686950 109.4.1.121 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mo25 0.61 53.0 3.40e-01 91.4% 38.7%
3798382 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 49.0 2.67e-01 88.2% 14.9%
3442551 109.4.1.63 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TAP42 0.60 53.0 3.68e-01 94.6% 66.0%
4023501 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 47.0 4.33e-01 83.9% 75.0%
3532664 3755.3.1.391 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › USHBP1_PDZ-bd 0.57 47.0 4.11e-01 95.7% 59.3%
3187296 603.1.1.98 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE, Syntaxin_2 0.55 48.0 3.60e-01 92.5% 78.1%
3938199 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 39.0 3.23e-01 75.3% 83.4%
3783583 109.4.1.158 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ERAP1_C 0.55 46.0 3.06e-01 92.5% 32.5%
3624742 109.4.1.555 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-5 0.54 45.0 2.57e-01 93.5% 10.6%
3609335 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 44.0 3.30e-01 88.2% 60.0%
3622106 109.4.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 0.53 42.0 2.31e-01 84.9% 14.3%
3613529 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 46.0 2.94e-01 100.0% 33.1%
3530765 192.29.1.203 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › IQUB 0.53 45.0 4.24e-01 95.7% 75.7%
3531698 196.1.1.1 ↗ alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS 0.53 44.0 3.88e-01 98.9% 61.4%
2859501 601.55.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › anti-complement domain of BBK32 › anti-complement domain of BBK32 0.52 45.0 3.86e-01 95.7% 87.3%
3778811 109.4.1.1390 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF31234 0.51 41.0 3.08e-01 90.3% 46.6%
4361794 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.50 43.0 3.32e-01 95.7% 43.7%
3263853 603.1.1.98 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE, Syntaxin_2 0.50 43.0 3.34e-01 92.5% 88.2%
3693118 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 40.0 3.31e-01 89.2% 53.3%