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IMGVR_UViG_3300018072_000240-3300018072-Ga0184635_1000105215
Arc-VirIMGVR_UViG_3300018072_000240-3300018072-Ga0184635_1000105215
Identity
- Kingdom:
- archaea
Quality
95.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-88
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07366.19 best | SnoaL | 33.3 | 5.40e-08 | 91.8% | 53.2% |
| PF12680.14 | SnoaL_2 | 29.7 | 1.10e-06 | 90.6% | 67.7% |
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sjwA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.94 | 87.0 | 7.11e-01 | 98.8% | 57.7% |
| 3k0zA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.85 | 75.0 | 6.11e-01 | 100.0% | 54.4% |
| 3ehcB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.83 | 70.0 | 6.04e-01 | 100.0% | 60.2% |
| 3f9sB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.80 | 74.0 | 6.17e-01 | 100.0% | 61.0% |
| 3kkgA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.80 | 73.0 | 6.01e-01 | 100.0% | 58.3% |
| 4h3uA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.79 | 70.0 | 5.96e-01 | 100.0% | 61.5% |
| 3ff2A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.78 | 69.0 | 6.15e-01 | 98.8% | 69.2% |
| 3g0kA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.75 | 64.0 | 5.60e-01 | 100.0% | 62.5% |
| 3en8A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.74 | 63.0 | 5.79e-01 | 100.0% | 71.4% |
| 3ebtA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.74 | 66.0 | 5.74e-01 | 100.0% | 67.2% |
| 3h3hB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.73 | 65.0 | 5.85e-01 | 100.0% | 75.0% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.73 | 38.0 | 4.07e-01 | 100.0% | 56.6% |
| 1nu3A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.73 | 63.0 | 5.29e-01 | 100.0% | 55.9% |
| 3f14A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.73 | 60.0 | 5.51e-01 | 100.0% | 68.8% |
| 3er7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.72 | 62.0 | 5.48e-01 | 94.1% | 66.7% |
| 2imjD01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.72 | 62.0 | 5.21e-01 | 100.0% | 57.0% |
| 3ff0A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.72 | 65.0 | 5.45e-01 | 100.0% | 61.7% |
| 3ef8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.71 | 63.0 | 5.30e-01 | 100.0% | 58.8% |
| 3axsA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.71 | 38.0 | 2.55e-01 | 100.0% | 13.7% |
| 3gzbA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.71 | 61.0 | 5.07e-01 | 100.0% | 53.2% |
| 4orlA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.70 | 57.0 | 5.30e-01 | 98.8% | 70.9% |
| 5dvyA01 | 3.10.450.100 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 | 0.70 | 63.0 | 5.53e-01 | 100.0% | 68.3% |
| 1mhmB00 | 3.30.360.50 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase | 0.69 | 31.0 | 3.76e-01 | 96.5% | 64.8% |
| 1of5B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.67 | 60.0 | 5.26e-01 | 100.0% | 67.2% |
| 5tvoB00 | 3.30.360.50 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase | 0.66 | 30.0 | 3.53e-01 | 96.5% | 59.3% |
| 3ep6B01 | 3.30.360.50 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase | 0.66 | 30.0 | 4.01e-01 | 96.5% | 85.4% |
| 3ebyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 55.0 | 4.63e-01 | 100.0% | 64.1% |
| 3k7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 54.0 | 5.07e-01 | 98.8% | 77.8% |
| 2dmyA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.62 | 35.0 | 3.43e-01 | 82.4% | 46.4% |
| 2d3o100 | 3.30.70.1050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain | 0.61 | 37.0 | 3.50e-01 | 100.0% | 50.0% |
| 3d1cA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.60 | 49.0 | 3.56e-01 | 90.6% | 81.1% |
| 1wxpA01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.57 | 42.0 | 4.24e-01 | 77.6% | 92.9% |
| 2r0cA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.57 | 45.0 | 3.33e-01 | 90.6% | 68.2% |
| 1xg9A02 | 3.10.25.20 | Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › | 0.52 | 29.0 | 3.37e-01 | 97.6% | 75.8% |
| 3d1bB00 | 1.20.920.40 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.51 | 34.0 | 3.20e-01 | 72.9% | 55.6% |
| 1sz7A00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.51 | 31.0 | 2.54e-01 | 100.0% | 31.4% |
| 3e0jB00 | 3.90.1030.20 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain | 0.50 | 34.0 | 2.95e-01 | 70.6% | 74.8% |
| 1bm9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 37.0 | 3.39e-01 | 81.2% | 82.5% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4927499 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.98 | 95.0 | 7.28e-01 | 100.0% | 51.5% |
| 3284100 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.90 | 85.0 | 6.53e-01 | 100.0% | 50.0% |
| 5039587 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.85 | 76.0 | 6.49e-01 | 96.5% | 62.3% |
| 4962810 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.83 | 73.0 | 6.19e-01 | 100.0% | 60.0% |
| 3989344 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.82 | 73.0 | 6.33e-01 | 100.0% | 64.8% |
| 5038381 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.81 | 71.0 | 6.22e-01 | 100.0% | 64.8% |
| 169590 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.81 | 75.0 | 6.20e-01 | 100.0% | 60.1% |
| 3958816 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.80 | 69.0 | 7.09e-01 | 98.8% | 97.5% |
| 5048351 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.80 | 69.0 | 5.73e-01 | 100.0% | 55.2% |
| 5033887 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.80 | 68.0 | 6.10e-01 | 96.5% | 67.8% |
| 169779 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.78 | 69.0 | 6.15e-01 | 98.8% | 69.2% |
| 5071439 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.78 | 65.0 | 5.47e-01 | 96.5% | 55.4% |
| 3947973 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.77 | 65.0 | 5.72e-01 | 97.6% | 62.4% |
| 4959875 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.77 | 68.0 | 5.75e-01 | 100.0% | 59.3% |
| 3282929 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.76 | 63.0 | 5.65e-01 | 95.3% | 65.0% |
| 4928725 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.75 | 67.0 | 5.97e-01 | 100.0% | 76.7% |
| 3955856 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.75 | 63.0 | 5.44e-01 | 100.0% | 60.0% |
| 3610658 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.71 | 63.0 | 5.18e-01 | 100.0% | 58.1% |
| 3418771 | 243.1.1.49 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 | 0.71 | 60.0 | 5.27e-01 | 100.0% | 61.5% |
| 4978000 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.69 | 60.0 | 5.25e-01 | 100.0% | 64.3% |
| 3637847 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.67 | 59.0 | 5.83e-01 | 100.0% | 97.8% |
| 3216464 | 243.1.1.28 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 | 0.66 | 57.0 | 5.13e-01 | 100.0% | 69.4% |
| 3995244 | 109.24.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in dedicator of cytokinesis protein 9 › Helical domain in dedicator of cytokinesis protein 9 | 0.58 | 32.0 | 2.88e-01 | 70.6% | 36.0% |
| 5024495 | 2012.1.1.2 ↗ | a/b three-layered sandwiches › LigB-like › LigB-like › LigB-like › LigB | 0.54 | 45.0 | 3.30e-01 | 100.0% | 32.2% |
| 3652283 | 109.4.1.1335 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, E_motif | 0.52 | 36.0 | 2.31e-01 | 71.8% | 19.1% |
| 5076290 | 2012.1.1.2 ↗ | a/b three-layered sandwiches › LigB-like › LigB-like › LigB-like › LigB | 0.51 | 42.0 | 3.09e-01 | 100.0% | 30.4% |
| 2609 | 101.1.2.38 ↗ | alpha arrays › HTH › HTH › winged helix domain › RTP | 0.50 | 37.0 | 3.39e-01 | 81.2% | 82.5% |