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IMGVR_UViG_3300018080_003942-3300018080-Ga0180433_1000026911
Arc-VirIMGVR_UViG_3300018080_003942-3300018080-Ga0180433_1000026911
Identity
- Kingdom:
- archaea
Quality
76.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 293-465
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iufA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.50 | 23.0 | 3.18e-01 | 70.5% | 90.9% |
D2
medium
residues 58-117_189-241
Domain cluster:
representative
D3
medium
residues 118-188_242-255
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4paaA05 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.72 | 51.0 | 5.27e-01 | 95.3% | 79.7% |
| 1v5vA03 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.70 | 50.0 | 5.28e-01 | 95.3% | 84.0% |
| 1darA05 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 41.0 | 4.14e-01 | 98.8% | 70.1% |
| 2kt2A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 38.0 | 4.12e-01 | 97.6% | 82.6% |
| 1wg1A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 39.0 | 4.18e-01 | 95.3% | 83.1% |
| 1vx4407 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 40.0 | 4.30e-01 | 98.8% | 89.9% |
| 2dchX01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.57 | 35.0 | 3.42e-01 | 94.1% | 55.9% |
| 2kkhA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 36.0 | 3.83e-01 | 96.5% | 76.0% |
| 2rt3A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 38.0 | 3.69e-01 | 97.6% | 63.9% |
| 1josA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.54 | 48.0 | 4.55e-01 | 100.0% | 91.0% |
| 1whyA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 37.0 | 3.99e-01 | 94.1% | 84.7% |
| 5do8B03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.54 | 35.0 | 3.64e-01 | 98.8% | 72.7% |
| 2kzfA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.53 | 46.0 | 4.31e-01 | 98.8% | 84.9% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.52 | 41.0 | 3.12e-01 | 100.0% | 32.2% |
| 1ie0A00 | 3.30.1360.80 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) | 0.52 | 42.0 | 3.45e-01 | 89.4% | 64.1% |
| 2fdoA00 | 3.30.1970.10 | Alpha Beta › 2-Layer Sandwich › AF2331-like fold › AF2331-like | 0.51 | 35.0 | 3.48e-01 | 71.8% | 78.5% |
| 3n89A02 | 3.30.310.210 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.51 | 37.0 | 3.26e-01 | 97.6% | 48.9% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3954964 | 50.1.1.3 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 | 0.78 | 72.0 | 5.96e-01 | 100.0% | 75.9% |
| 4567015 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.68 | 50.0 | 5.13e-01 | 97.6% | 83.5% |
| 3795488 | 1.1.8.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C | 0.66 | 52.0 | 5.24e-01 | 100.0% | 84.7% |
| 4927600 | 304.4.1.19 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › SCO4226-like | 0.66 | 44.0 | 4.69e-01 | 98.8% | 78.7% |
| 4010459 | 310.3.1.4 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › GspL_C | 0.64 | 46.0 | 4.11e-01 | 100.0% | 53.3% |
| 4011585 | 1.1.8.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C | 0.63 | 46.0 | 3.80e-01 | 81.2% | 42.6% |
| 4634282 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.62 | 31.0 | 3.59e-01 | 83.5% | 65.1% |
| 3995117 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.62 | 44.0 | 4.32e-01 | 100.0% | 68.4% |
| 4966046 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.61 | 50.0 | 5.07e-01 | 100.0% | 89.4% |
| 5065891 | 304.12.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 | 0.61 | 43.0 | 4.31e-01 | 100.0% | 70.0% |
| 3163728 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.61 | 53.0 | 4.85e-01 | 94.1% | 82.7% |
| 3192637 | 1.1.8.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C | 0.61 | 53.0 | 4.09e-01 | 97.6% | 55.8% |
| 3515518 | 1.1.8.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C | 0.60 | 54.0 | 4.75e-01 | 100.0% | 73.6% |
| 4979802 | 304.8.1.113 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GYD | 0.60 | 45.0 | 4.72e-01 | 100.0% | 88.0% |
| 3475787 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.60 | 37.0 | 3.87e-01 | 90.6% | 66.3% |
| 3351130 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.60 | 36.0 | 4.30e-01 | 96.5% | 94.5% |
| 3515089 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.59 | 40.0 | 4.43e-01 | 98.8% | 89.7% |
| 4178967 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.58 | 39.0 | 4.12e-01 | 85.9% | 77.3% |
| 3448591 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.57 | 34.0 | 4.13e-01 | 87.1% | 100.0% |
| 3739576 | 327.11.2.27 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin | 0.56 | 35.0 | 4.06e-01 | 87.1% | 94.5% |
| 3445182 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.56 | 44.0 | 3.90e-01 | 100.0% | 58.4% |
| 4807126 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.55 | 46.0 | 4.45e-01 | 92.9% | 79.6% |
| 3509841 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.55 | 37.0 | 3.98e-01 | 97.6% | 85.7% |
| 4497594 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.55 | 37.0 | 3.89e-01 | 85.9% | 78.7% |
| 4417756 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.55 | 38.0 | 3.87e-01 | 88.2% | 72.9% |
| 3325733 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.54 | 33.0 | 3.91e-01 | 77.6% | 100.0% |
| 3253762 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 43.0 | 4.42e-01 | 97.6% | 93.8% |
| 4578567 | 327.10.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › RBFA | 0.53 | 46.0 | 4.26e-01 | 100.0% | 80.9% |
| 4598961 | 327.10.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related | 0.53 | 47.0 | 4.26e-01 | 100.0% | 80.0% |
| 3752343 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.52 | 30.0 | 3.57e-01 | 91.8% | 87.3% |
| 4088599 | 327.10.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › RBFA | 0.52 | 45.0 | 4.20e-01 | 100.0% | 80.9% |
| 3786740 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.52 | 45.0 | 4.13e-01 | 98.8% | 72.2% |
| 5013605 | 304.165.1.0 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 | 0.52 | 46.0 | 3.88e-01 | 100.0% | 88.3% |
| 3553413 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.51 | 35.0 | 3.54e-01 | 78.8% | 70.6% |
| 3489240 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.50 | 39.0 | 2.60e-01 | 84.7% | 66.0% |