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IMGVR_UViG_3300018080_003942-3300018080-Ga0180433_1000026951

Arc-Vir

IMGVR_UViG_3300018080_003942-3300018080-Ga0180433_1000026951

Identity

Kingdom:
archaea

Quality

68.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-80
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.66 43.0 4.57e-01 93.5% 76.1%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 51.0 4.30e-01 96.1% 99.2%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 35.0 4.27e-01 87.0% 100.0%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.58 40.0 4.29e-01 84.4% 83.3%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 50.0 4.25e-01 96.1% 93.7%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 39.0 4.09e-01 71.4% 90.1%
5jzjA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 40.0 3.80e-01 75.3% 92.6%
2v14A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 47.0 4.05e-01 97.4% 97.8%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 36.0 3.91e-01 85.7% 80.6%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 46.0 3.36e-01 100.0% 47.8%
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 42.0 3.96e-01 100.0% 67.7%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 34.0 3.62e-01 74.0% 77.0%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 47.0 4.16e-01 100.0% 98.3%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 41.0 3.79e-01 84.4% 88.3%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 45.0 3.87e-01 93.5% 75.8%
3fcyA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 44.0 2.98e-01 94.8% 46.1%
2db5A00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 46.0 3.93e-01 100.0% 64.8%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 35.0 3.58e-01 71.4% 83.3%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.51 39.0 3.48e-01 85.7% 82.9%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 35.0 3.60e-01 71.4% 90.1%
4h61A00 3.10.450.580 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mediator complex, subunit Med6 0.50 33.0 2.77e-01 100.0% 38.0%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4966836 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 42.0 4.76e-01 81.8% 81.8%
3985617 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.70 43.0 4.50e-01 83.1% 68.6%
3594572 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 47.0 3.80e-01 87.0% 67.1%
3544618 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.59 47.0 4.57e-01 92.2% 77.6%
4959991 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 46.0 4.84e-01 92.2% 94.3%
4946882 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 35.0 3.97e-01 100.0% 83.6%
3517153 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.58 40.0 3.96e-01 71.4% 76.2%
3576652 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.57 49.0 3.31e-01 96.1% 41.0%
3606532 2484.6.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR 0.56 36.0 3.43e-01 77.9% 55.6%
3701501 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 40.0 4.38e-01 97.4% 89.2%
4220608 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.56 39.0 4.02e-01 97.4% 76.0%
4926797 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.56 42.0 3.56e-01 80.5% 59.2%
3867421 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 42.0 3.00e-01 84.4% 29.2%
4321479 2.1.1.84 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_N 0.55 41.0 3.42e-01 81.8% 56.6%
3206724 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.52 36.0 2.89e-01 71.4% 59.4%
3924385 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.51 43.0 2.96e-01 96.1% 43.9%
5810 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.50 42.0 3.96e-01 96.1% 85.9%