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IMGVR_UViG_3300018080_003942-3300018080-Ga0180433_1000026952
Arc-VirIMGVR_UViG_3300018080_003942-3300018080-Ga0180433_1000026952
Identity
- Kingdom:
- archaea
Quality
56.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 102-155
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3eebA00 | 3.40.50.11050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain | 0.63 | 46.0 | 3.16e-01 | 81.5% | 80.5% |
| 1aogA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.61 | 42.0 | 3.32e-01 | 72.2% | 89.3% |
| 3ho6B00 | 3.40.50.11050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain | 0.61 | 46.0 | 3.04e-01 | 83.3% | 78.7% |
| 6cmzA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.60 | 47.0 | 3.80e-01 | 92.6% | 80.7% |
| 2hqmA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.60 | 45.0 | 3.01e-01 | 83.3% | 61.0% |
| 3pfmA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.59 | 41.0 | 2.69e-01 | 72.2% | 62.1% |
| 3nbxX04 | 2.40.128.430 | Mainly Beta › Beta Barrel › Lipocalin › | 0.59 | 51.0 | 4.13e-01 | 98.1% | 81.3% |
| 3jyyA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.59 | 44.0 | 3.43e-01 | 92.6% | 34.3% |
| 1gv4A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 40.0 | 2.89e-01 | 72.2% | 71.7% |
| 3qokA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.58 | 41.0 | 3.40e-01 | 75.9% | 100.0% |
| 3gvpA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 44.0 | 3.20e-01 | 88.9% | 28.9% |
| 1nijA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 36.0 | 2.52e-01 | 70.4% | 16.9% |
| 4w8kA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.57 | 39.0 | 3.33e-01 | 87.0% | 42.9% |
| 5towB02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 43.0 | 3.17e-01 | 88.9% | 29.4% |
| 1f44A01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.55 | 43.0 | 2.98e-01 | 87.0% | 31.4% |
| 3luuA00 | 3.30.2020.30 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › | 0.55 | 44.0 | 3.85e-01 | 94.4% | 71.9% |
| 3we0A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 41.0 | 2.68e-01 | 83.3% | 77.4% |
| 1gydB00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 44.0 | 2.76e-01 | 90.7% | 29.2% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 37.0 | 3.67e-01 | 74.1% | 69.0% |
| 5kiqA02 | 3.10.20.890 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 40.0 | 3.77e-01 | 88.9% | 87.5% |
| 4fk1A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 41.0 | 2.86e-01 | 87.0% | 97.3% |
| 3f0zA01 | 3.30.310.260 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.53 | 37.0 | 3.02e-01 | 90.7% | 36.6% |
| 3e8tA00 | 3.15.10.30 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain | 0.53 | 41.0 | 2.94e-01 | 100.0% | 81.0% |
| 3pnnA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.52 | 41.0 | 2.68e-01 | 92.6% | 27.9% |
| 6efaA02 | 3.10.20.890 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 40.0 | 3.68e-01 | 90.7% | 93.6% |
| 3ab1B01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 40.0 | 2.74e-01 | 87.0% | 88.7% |
| 1a2fA02 | 1.10.420.10 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 | 0.52 | 39.0 | 3.05e-01 | 83.3% | 71.9% |
| 1r77A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 37.0 | 3.23e-01 | 83.3% | 64.6% |
| 4wh5A00 | 3.30.460.40 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.51 | 41.0 | 3.02e-01 | 90.7% | 32.3% |
| 1rsgA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 40.0 | 2.65e-01 | 87.0% | 96.7% |
| 2uz8A01 | 3.40.30.90 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.51 | 38.0 | 3.84e-01 | 85.2% | 83.3% |
| 1dd5A02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.51 | 41.0 | 3.76e-01 | 94.4% | 100.0% |
| 3klkA01 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.51 | 42.0 | 3.07e-01 | 96.3% | 37.9% |
| 2vseA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 40.0 | 3.08e-01 | 92.6% | 98.6% |
| 2vseA03 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.50 | 39.0 | 3.08e-01 | 94.4% | 91.5% |
| 7razA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 39.0 | 3.43e-01 | 88.9% | 56.5% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3228875 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.68 | 43.0 | 4.29e-01 | 74.1% | 61.8% |
| 5049487 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.66 | 45.0 | 3.29e-01 | 70.4% | 80.7% |
| 4780493 | 3293.1.1.1 ↗ | beta barrels › LARA domain › LARA domain › LARA domain › LARA_dom | 0.64 | 47.0 | 4.25e-01 | 79.6% | 100.0% |
| 4453799 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.62 | 43.0 | 2.61e-01 | 74.1% | 65.0% |
| 3998283 | 3534.1.1.3 ↗ | beta barrels › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › DUF4505 | 0.62 | 42.0 | 3.60e-01 | 70.4% | 57.6% |
| 3818934 | 2004.1.1.51 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_1 | 0.61 | 42.0 | 2.68e-01 | 72.2% | 14.2% |
| 3512557 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 45.0 | 3.52e-01 | 79.6% | 52.2% |
| 1489661 | 3935.1.1.1 ↗ | extended segments › 4E-BP2 › 4E-BP2 › 4E-BP2 › eIF_4EBP | 0.60 | 38.0 | 4.05e-01 | 81.5% | 75.6% |
| 3897880 | 3935.1.1.1 ↗ | extended segments › 4E-BP2 › 4E-BP2 › 4E-BP2 › eIF_4EBP | 0.59 | 39.0 | 3.93e-01 | 88.9% | 67.3% |
| 3476114 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.59 | 47.0 | 2.80e-01 | 88.9% | 22.2% |
| None | — | 0.58 | 50.0 | 2.93e-01 | 98.1% | 60.4% | |
| 3953524 | 378.1.1.23 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 | 0.58 | 47.0 | 3.58e-01 | 100.0% | 57.4% |
| 3990001 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.58 | 39.0 | 3.94e-01 | 70.4% | 79.2% |
| 2156991 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.58 | 40.0 | 2.46e-01 | 74.1% | 79.1% |
| 3953218 | 378.1.1.23 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 | 0.58 | 46.0 | 3.52e-01 | 98.1% | 67.1% |
| 3882733 | 3935.1.1.1 ↗ | extended segments › 4E-BP2 › 4E-BP2 › 4E-BP2 › eIF_4EBP | 0.57 | 38.0 | 3.61e-01 | 87.0% | 54.4% |
| 3388785 | 109.1.1.11 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › Arc1p_N_like | 0.57 | 47.0 | 3.39e-01 | 94.4% | 49.1% |
| 3722316 | 1.1.1.27 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_N | 0.57 | 46.0 | 2.72e-01 | 87.0% | 42.7% |
| 3417954 | 2.1.1.39 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rbc25 | 0.57 | 45.0 | 3.50e-01 | 96.3% | 39.2% |
| 1391704 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.56 | 40.0 | 3.07e-01 | 75.9% | 80.2% |
| 3944169 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.56 | 42.0 | 3.04e-01 | 81.5% | 92.7% |
| 3291545 | 3859.1.1.0 ↗ | alpha arrays › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain | 0.56 | 46.0 | 3.70e-01 | 100.0% | 79.2% |
| 4389738 | 2003.1.2.11 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.55 | 43.0 | 2.98e-01 | 87.0% | 92.5% |
| 2805 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.55 | 43.0 | 3.24e-01 | 87.0% | 43.6% |
| 4429419 | 4167.1.1.1 ↗ | beta complex topology › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › LlgE_F_G_D1 | 0.55 | 46.0 | 3.40e-01 | 98.1% | 78.1% |
| 3624661 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.54 | 42.0 | 3.12e-01 | 87.0% | 79.3% |
| None | — | 0.54 | 40.0 | 2.69e-01 | 96.3% | 18.3% | |
| 1833392 | 2003.1.2.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 | 0.54 | 38.0 | 2.76e-01 | 75.9% | 87.5% |
| 4078367 | 2003.1.2.58 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 | 0.54 | 44.0 | 2.72e-01 | 94.4% | 37.3% |
| 3599057 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.54 | 44.0 | 2.73e-01 | 94.4% | 38.3% |
| 3994804 | 2003.1.2.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO | 0.53 | 40.0 | 2.64e-01 | 83.3% | 81.2% |
| 4176722 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.53 | 44.0 | 3.70e-01 | 98.1% | 76.0% |
| 3722079 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.53 | 41.0 | 2.53e-01 | 87.0% | 84.9% |
| 3325200 | 3468.1.1.1 ↗ | a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN | 0.53 | 37.0 | 2.87e-01 | 74.1% | 55.2% |
| 3764740 | 109.4.1.1399 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tuberin, DUF3384 | 0.53 | 41.0 | 2.49e-01 | 83.3% | 18.8% |
| 4861382 | 5.1.4.40 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 | 0.52 | 37.0 | 2.82e-01 | 96.3% | 27.5% |
| 3219127 | 2003.1.2.130 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like, Pyr_redox_2, NAD_binding_8 | 0.52 | 41.0 | 2.41e-01 | 87.0% | 78.1% |
| None | — | 0.52 | 40.0 | 2.31e-01 | 100.0% | 7.3% | |
| 4529120 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.52 | 40.0 | 2.71e-01 | 87.0% | 83.2% |
| 3454744 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.52 | 40.0 | 2.40e-01 | 85.2% | 88.3% |
| 5026630 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.52 | 43.0 | 2.75e-01 | 98.1% | 62.2% |
| None | — | 0.51 | 39.0 | 2.56e-01 | 85.2% | 86.2% | |
| 4288670 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.51 | 40.0 | 2.50e-01 | 87.0% | 71.8% |
| 4079351 | 2003.1.2.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.51 | 39.0 | 2.68e-01 | 87.0% | 83.0% |
| 3818617 | 376.1.1.103 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_Vps41 | 0.51 | 33.0 | 3.31e-01 | 77.8% | 63.6% |
| 2552766 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.51 | 36.0 | 2.66e-01 | 75.9% | 86.5% |
| 3721954 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.51 | 41.0 | 2.96e-01 | 96.3% | 55.6% |
| 3698027 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.51 | 39.0 | 2.52e-01 | 87.0% | 71.0% |
| 3569289 | 4.1.1.118 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_15 | 0.51 | 39.0 | 3.51e-01 | 88.9% | 87.5% |
| 3187470 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.50 | 39.0 | 2.53e-01 | 87.0% | 77.0% |
| 4131958 | 6.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil | 0.50 | 41.0 | 3.21e-01 | 98.1% | 78.5% |