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IMGVR_UViG_3300018407_000329-3300018407-Ga0187900_10055688
Arc-VirIMGVR_UViG_3300018407_000329-3300018407-Ga0187900_10055688
Identity
- Kingdom:
- archaea
Quality
75.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 9-72
D2
medium
residues 86-159
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w9jA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.62 | 38.0 | 3.95e-01 | 90.5% | 64.8% |
| 3c4bA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 34.0 | 3.63e-01 | 87.8% | 67.2% |
| 2kieA00 | 2.30.29.110 | Mainly Beta › Roll › PH-domain like › | 0.56 | 39.0 | 3.39e-01 | 81.1% | 45.2% |
| 5wceA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.55 | 47.0 | 4.03e-01 | 94.6% | 95.8% |
| 5oj2B01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 40.0 | 3.88e-01 | 82.4% | 94.2% |
| 2k4qA00 | 4.10.410.40 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › | 0.53 | 43.0 | 3.46e-01 | 93.2% | 85.3% |
| 1f9qD00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 30.0 | 3.21e-01 | 85.1% | 63.6% |
| 5oj2A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 39.0 | 3.76e-01 | 82.4% | 96.6% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4930386 | 11.1.1.1395 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › HcyBio | 0.63 | 43.0 | 3.93e-01 | 71.6% | 81.0% |
| 5060418 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.62 | 33.0 | 2.81e-01 | 94.6% | 32.5% |
| 5052517 | 11.1.1.1395 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › HcyBio | 0.60 | 42.0 | 3.87e-01 | 74.3% | 83.0% |
| 3657220 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.58 | 45.0 | 2.82e-01 | 85.1% | 38.9% |
| 3422528 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 35.0 | 3.86e-01 | 82.4% | 75.0% |
| 4288150 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.53 | 42.0 | 4.07e-01 | 91.9% | 75.3% |
| 4564499 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.53 | 33.0 | 3.17e-01 | 74.3% | 50.0% |
| 4260316 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.53 | 40.0 | 3.91e-01 | 100.0% | 73.8% |
| 3684771 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.53 | 42.0 | 3.55e-01 | 94.6% | 71.0% |
| 3917549 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.53 | 42.0 | 2.83e-01 | 89.2% | 37.7% |
| 3494352 | 3991.1.1.2 ↗ | alpha bundles › Rabin8 C-terminal domain › Rabin8 C-terminal domain › Rabin8 C-terminal domain › RAB3A-like_C | 0.52 | 44.0 | 3.45e-01 | 97.3% | 97.6% |
| 5040104 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.52 | 38.0 | 2.39e-01 | 81.1% | 34.5% |
| 4402835 | 4010.1.1.2 ↗ | a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 0.52 | 45.0 | 3.12e-01 | 100.0% | 59.6% |
| 4384457 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.51 | 39.0 | 3.36e-01 | 91.9% | 48.5% |
| 3914739 | 223.1.1.78 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GPR158_179_EC | 0.51 | 38.0 | 2.85e-01 | 81.1% | 70.7% |
| 4956603 | 327.11.2.13 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PNO1_2nd | 0.51 | 41.0 | 3.44e-01 | 86.5% | 58.4% |
| 4223411 | 7.1.1.10 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 | 0.51 | 39.0 | 3.70e-01 | 89.2% | 71.6% |
| 3290954 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.51 | 38.0 | 3.57e-01 | 93.2% | 64.2% |
| 3659226 | 5.1.3.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 | 0.51 | 41.0 | 3.01e-01 | 93.2% | 100.0% |
| 5022543 | 2002.1.1.36 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind | 0.50 | 39.0 | 2.39e-01 | 85.1% | 99.4% |
| 3549951 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.50 | 39.0 | 3.63e-01 | 86.5% | 86.3% |
| 4069753 | 295.1.1.2 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › SsgA | 0.50 | 43.0 | 3.57e-01 | 100.0% | 52.6% |