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IMGVR_UViG_3300018418_000994-3300018418-Ga0181567_100128415
Arc-VirIMGVR_UViG_3300018418_000994-3300018418-Ga0181567_100128415
Identity
- Kingdom:
- archaea
Quality
73.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-65
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4g6xA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.62 | 53.0 | 4.30e-01 | 100.0% | 89.9% |
| 3hj4A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.60 | 50.0 | 4.11e-01 | 100.0% | 84.0% |
| 2dnlA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 47.0 | 4.34e-01 | 95.2% | 87.6% |
| 1oxxK02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 32.0 | 3.68e-01 | 93.7% | 75.6% |
| 3ub0A02 | 3.30.70.3540 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nsp8 replicase, head domain | 0.57 | 38.0 | 3.40e-01 | 84.1% | 47.8% |
| 2ra9A01 | 3.10.540.10 | Alpha Beta › Roll › duf1285 like fold › duf1285 like domain | 0.56 | 38.0 | 4.01e-01 | 71.4% | 98.1% |
| 2m2lA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 36.0 | 3.58e-01 | 100.0% | 65.7% |
| 6ywnA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.54 | 44.0 | 3.89e-01 | 100.0% | 92.6% |
| 6fezA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 40.0 | 3.55e-01 | 81.0% | 95.7% |
| 3nybA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.54 | 43.0 | 3.80e-01 | 98.4% | 90.9% |
| 4l8jA01 | 2.40.420.20 | Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › | 0.54 | 39.0 | 3.41e-01 | 84.1% | 50.0% |
| 1byfA00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.53 | 41.0 | 3.35e-01 | 85.7% | 87.0% |
| 2ahmH02 | 3.30.70.3540 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nsp8 replicase, head domain | 0.53 | 40.0 | 3.54e-01 | 88.9% | 55.9% |
| 3ne5B01 | 2.40.420.20 | Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › | 0.52 | 39.0 | 3.57e-01 | 84.1% | 59.3% |
| 2ra6C00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 36.0 | 2.92e-01 | 76.2% | 60.8% |
| 4y85C01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 37.0 | 2.97e-01 | 77.8% | 61.3% |
| 3a32A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.50 | 41.0 | 3.27e-01 | 95.2% | 79.4% |
| 8gj8A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 40.0 | 2.78e-01 | 92.1% | 95.6% |
| 7vljA01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.50 | 36.0 | 3.22e-01 | 77.8% | 57.0% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4938828 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 40.0 | 4.11e-01 | 84.1% | 75.0% |
| 3680147 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.58 | 38.0 | 2.53e-01 | 79.4% | 15.9% |
| 3589934 | 219.1.1.34 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C47 | 0.57 | 49.0 | 3.63e-01 | 100.0% | 85.8% |
| 5047703 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 35.0 | 2.73e-01 | 100.0% | 27.6% |
| 3996820 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.54 | 44.0 | 4.02e-01 | 93.7% | 81.1% |
| 3959770 | 4.31.1.0 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 | 0.54 | 41.0 | 3.66e-01 | 84.1% | 57.8% |
| 4086268 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.54 | 37.0 | 3.30e-01 | 71.4% | 58.9% |
| 3803752 | 219.1.1.124 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF29469 | 0.54 | 45.0 | 3.07e-01 | 100.0% | 92.7% |
| 3168819 | 4076.3.1.3 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C | 0.54 | 39.0 | 3.74e-01 | 96.8% | 67.6% |
| 3602511 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 37.0 | 3.63e-01 | 84.1% | 65.7% |
| 4168653 | 4.1.1.111 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_RapA | 0.52 | 37.0 | 4.01e-01 | 82.5% | 96.0% |
| 4636455 | 375.1.1.299 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf | 0.52 | 35.0 | 3.97e-01 | 81.0% | 100.0% |
| 4565130 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 46.0 | 4.06e-01 | 100.0% | 84.2% |
D2
high
residues 73-112
Domain cluster:
rep: NC_070965.1__YP_010670545.1__PQC15_gp006__00006__D209-245