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IMGVR_UViG_3300018427_000974-3300018427-Ga0187903_100535672
Arc-VirIMGVR_UViG_3300018427_000974-3300018427-Ga0187903_100535672
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-84
Domain cluster:
rep: IMGVR_UViG_2860317346_000001-2860317346-2860319207__D3-75
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18843.7 best | LPD28 | 60.1 | 1.90e-16 | 92.6% | 71.1% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3jqwC00 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 42.0 | 3.76e-01 | 80.2% | 82.6% |
| 4g54A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.56 | 39.0 | 3.44e-01 | 72.8% | 87.2% |
| 2derA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 31.0 | 3.10e-01 | 90.1% | 51.7% |
| 1sr4A00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.52 | 38.0 | 3.04e-01 | 77.8% | 52.1% |
| 4tkoB01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.52 | 36.0 | 3.48e-01 | 72.8% | 100.0% |
| 1w9sA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 40.0 | 3.52e-01 | 88.9% | 89.6% |
| 6heiA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 39.0 | 2.67e-01 | 85.2% | 51.4% |
| 4hffA00 | 3.90.1720.70 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.51 | 34.0 | 2.87e-01 | 70.4% | 45.2% |
| 5zspA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 39.0 | 3.42e-01 | 85.2% | 85.3% |
| 3x17A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 37.0 | 3.47e-01 | 77.8% | 74.5% |
| 3a2yA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.51 | 34.0 | 2.75e-01 | 71.6% | 58.4% |
| 7wqxA01 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.50 | 38.0 | 3.54e-01 | 82.7% | 77.4% |
| 1x5xA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 35.0 | 3.22e-01 | 71.6% | 81.7% |
| 1v43A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 35.0 | 3.83e-01 | 91.4% | 92.2% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3791560 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.61 | 48.0 | 3.63e-01 | 85.2% | 70.8% |
| 5029749 | 1.1.7.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae | 0.58 | 33.0 | 3.28e-01 | 91.4% | 51.7% |
| 3223751 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.57 | 44.0 | 3.33e-01 | 85.2% | 63.8% |
| 3914563 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.55 | 43.0 | 3.51e-01 | 87.7% | 78.1% |
| 3744357 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.55 | 32.0 | 3.21e-01 | 91.4% | 54.1% |
| 4514238 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.55 | 32.0 | 3.28e-01 | 91.4% | 59.0% |
| 3453133 | 10.32.1.8 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 | 0.55 | 42.0 | 3.31e-01 | 85.2% | 61.6% |
| 4995489 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 39.0 | 3.68e-01 | 79.0% | 93.3% |
| 4398429 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.53 | 31.0 | 3.21e-01 | 91.4% | 58.7% |
| 4996023 | 2.1.1.77 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_RpbG | 0.53 | 37.0 | 3.39e-01 | 74.1% | 100.0% |
| 3906085 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.53 | 38.0 | 3.12e-01 | 79.0% | 60.0% |
| 3576125 | 10.32.1.28 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Sad1_UNC | 0.52 | 41.0 | 3.12e-01 | 88.9% | 68.4% |
| 5069810 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.52 | 30.0 | 3.02e-01 | 91.4% | 55.0% |