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IMGVR_UViG_3300018427_000974-3300018427-Ga0187903_100535673
Arc-VirIMGVR_UViG_3300018427_000974-3300018427-Ga0187903_100535673
Identity
- Kingdom:
- archaea
Quality
93.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 47-108
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s7hA01 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 42.0 | 3.87e-01 | 100.0% | 48.8% |
| 4oloB00 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.63 | 41.0 | 3.70e-01 | 100.0% | 50.0% |
| 3dgpB00 | 3.30.70.1220 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TFB5-like | 0.61 | 40.0 | 4.04e-01 | 100.0% | 66.7% |
| 1ibaA00 | 3.30.1360.60 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Glucose permease domain IIB | 0.59 | 38.0 | 3.55e-01 | 98.4% | 51.3% |
| 1dd5A02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.58 | 35.0 | 3.32e-01 | 91.9% | 49.3% |
| 3lv0A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.58 | 46.0 | 3.72e-01 | 93.5% | 100.0% |
| 3vwdA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 41.0 | 2.99e-01 | 88.7% | 25.0% |
| 2aamC00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 42.0 | 2.71e-01 | 100.0% | 17.5% |
| 3thxB04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.54 | 49.0 | 3.84e-01 | 100.0% | 62.5% |
| 2gu0A02 | 3.30.428.20 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Rotavirus NSP2 fragment, C-terminal domain | 0.54 | 40.0 | 3.11e-01 | 83.9% | 62.9% |
| 4pg4B03 | 3.30.70.3100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 38.0 | 3.63e-01 | 75.8% | 88.0% |
| 4fhdA02 | 3.80.30.30 | Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › | 0.54 | 47.0 | 3.23e-01 | 100.0% | 43.6% |
| 2j0nB00 | 1.20.1710.10 | Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like | 0.53 | 44.0 | 3.08e-01 | 100.0% | 29.4% |
| 1dusA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 36.0 | 2.65e-01 | 72.6% | 69.6% |
| 2xfvA00 | 3.10.260.30 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › | 0.53 | 37.0 | 3.13e-01 | 75.8% | 58.3% |
| 4q6rA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 46.0 | 3.59e-01 | 98.4% | 87.8% |
| 5yk4A04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.52 | 46.0 | 3.60e-01 | 100.0% | 59.6% |
| 4ebrA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.52 | 36.0 | 2.76e-01 | 74.2% | 70.7% |
| 3cdhA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 43.0 | 3.48e-01 | 100.0% | 64.9% |
| 4hv0C00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.52 | 37.0 | 3.28e-01 | 93.5% | 52.8% |
| 4dw8A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.52 | 41.0 | 3.54e-01 | 91.9% | 72.6% |
| 3oz2A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 44.0 | 3.05e-01 | 100.0% | 82.3% |
| 1fs7A01 | 1.10.1130.10 | Mainly Alpha › Orthogonal Bundle › Flavocytochrome C3; Chain A, domain 2 › Flavocytochrome C3; Chain A | 0.51 | 39.0 | 2.49e-01 | 82.3% | 86.3% |
| 1a7jA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 41.0 | 2.70e-01 | 90.3% | 97.1% |
| 4b8xA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 43.0 | 3.40e-01 | 98.4% | 65.0% |
| 1yelA00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.51 | 34.0 | 3.02e-01 | 71.0% | 53.9% |
| 4yosA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 38.0 | 2.80e-01 | 87.1% | 31.2% |
| 4a5pB01 | 3.40.30.60 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 | 0.51 | 40.0 | 3.17e-01 | 91.9% | 42.4% |
| 1ewqA04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.50 | 43.0 | 3.43e-01 | 100.0% | 58.8% |
| 4ynmB00 | 2.170.270.10 | Mainly Beta › Beta Complex › Beta-clip-like › SET domain | 0.50 | 34.0 | 2.55e-01 | 72.6% | 54.6% |
| 2o8bB04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.50 | 46.0 | 3.54e-01 | 100.0% | 77.9% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3990940 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.73 | 50.0 | 4.71e-01 | 98.4% | 58.7% |
| 4068129 | 288.1.1.1 ↗ | a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › Cu-oxidase_4 | 0.65 | 44.0 | 2.93e-01 | 71.0% | 96.2% |
| 5028844 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.64 | 36.0 | 3.43e-01 | 91.9% | 44.0% |
| 3790028 | 4340.1.1.2 ↗ | a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb2_C | 0.62 | 39.0 | 3.95e-01 | 98.4% | 63.5% |
| 4927584 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.60 | 36.0 | 3.78e-01 | 91.9% | 65.5% |
| 4961776 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 54.0 | 4.59e-01 | 100.0% | 96.0% |
| 4137468 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.59 | 45.0 | 3.18e-01 | 100.0% | 27.0% |
| 4667119 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 52.0 | 4.07e-01 | 100.0% | 63.7% |
| 4993867 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.59 | 34.0 | 2.97e-01 | 91.9% | 34.7% |
| 4935618 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.57 | 50.0 | 4.38e-01 | 100.0% | 93.7% |
| 5023877 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.57 | 44.0 | 3.47e-01 | 82.3% | 89.6% |
| 4137642 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.57 | 36.0 | 3.70e-01 | 98.4% | 66.7% |
| 4094836 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.56 | 46.0 | 3.26e-01 | 100.0% | 30.6% |
| 3219629 | 109.4.1.2417 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Importin_rep_6, TPR_IPO5 | 0.56 | 44.0 | 2.63e-01 | 87.1% | 18.5% |
| 5023633 | 304.24.1.5 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N | 0.55 | 39.0 | 3.85e-01 | 75.8% | 88.6% |
| 3514596 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 44.0 | 4.01e-01 | 88.7% | 85.9% |
| 4537345 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.55 | 37.0 | 3.37e-01 | 71.0% | 83.5% |
| 5010818 | 101.1.2.150 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_45 | 0.54 | 46.0 | 3.91e-01 | 100.0% | 69.1% |
| 4815139 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.54 | 38.0 | 3.11e-01 | 96.8% | 40.0% |
| 4011868 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.53 | 44.0 | 4.13e-01 | 100.0% | 73.3% |
| 3965193 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.53 | 45.0 | 3.92e-01 | 98.4% | 89.0% |
| 4982168 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.53 | 47.0 | 3.73e-01 | 100.0% | 63.1% |
| 4076057 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.53 | 47.0 | 3.01e-01 | 100.0% | 26.1% |
| 5006819 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.53 | 44.0 | 3.93e-01 | 96.8% | 88.4% |
| 3279731 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.53 | 45.0 | 3.91e-01 | 95.2% | 89.5% |
| 4559752 | 242.1.1.6 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_WhiA | 0.53 | 36.0 | 3.25e-01 | 72.6% | 60.0% |
| 3926287 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.52 | 46.0 | 2.92e-01 | 100.0% | 23.5% |
| 4978956 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.52 | 42.0 | 3.55e-01 | 88.7% | 79.0% |
| 3592378 | 253.1.1.0 ↗ | a+b complex topology › Argininosuccinate synthetase-C › Argininosuccinate synthetase-C › Argininosuccinate synthetase-C | 0.52 | 43.0 | 3.19e-01 | 100.0% | 68.4% |
| 3590215 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.52 | 45.0 | 2.88e-01 | 96.8% | 77.8% |
| 3402465 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 36.0 | 3.42e-01 | 75.8% | 90.0% |
| 3521668 | 304.8.1.49 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › R1_ABCA1 | 0.52 | 36.0 | 3.42e-01 | 75.8% | 90.0% |
| 5083918 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.52 | 46.0 | 3.63e-01 | 100.0% | 59.2% |
| 4962040 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 42.0 | 3.34e-01 | 95.2% | 67.9% |
| 4969654 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.51 | 45.0 | 2.93e-01 | 100.0% | 28.1% |
| 3264673 | 101.1.2.498 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25870 | 0.51 | 43.0 | 3.43e-01 | 96.8% | 49.2% |
| 3931606 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.50 | 46.0 | 3.72e-01 | 100.0% | 63.5% |
| 4974053 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.50 | 35.0 | 3.38e-01 | 75.8% | 92.0% |
| 3669120 | 304.8.1.58 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ABCA12_C | 0.50 | 35.0 | 3.32e-01 | 75.8% | 88.7% |
| 3212393 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.50 | 45.0 | 3.73e-01 | 100.0% | 74.5% |
D2
medium
residues 109-171
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.70 | 50.0 | 4.43e-01 | 76.2% | 64.9% |
| 4ye6A02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.64 | 45.0 | 4.67e-01 | 76.2% | 98.3% |
| 4me9B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.64 | 54.0 | 3.97e-01 | 100.0% | 86.6% |
| 2c5uA02 | 1.10.3550.20 | Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › | 0.61 | 44.0 | 3.51e-01 | 77.8% | 38.9% |
| 2af7D00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.59 | 49.0 | 4.12e-01 | 100.0% | 58.7% |
| 3ly7A02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 48.0 | 3.75e-01 | 100.0% | 40.4% |
| 5fzsA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 43.0 | 3.74e-01 | 87.3% | 56.1% |
| 4axsA00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.55 | 44.0 | 2.98e-01 | 95.2% | 33.3% |
| 2gf2A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.54 | 39.0 | 3.20e-01 | 85.7% | 38.1% |
| 4u04B01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 42.0 | 3.84e-01 | 90.5% | 64.8% |
| 2ii2A04 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.53 | 41.0 | 3.96e-01 | 93.7% | 93.7% |
| 4f55A01 | 1.10.10.2520 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Cell wall hydrolase SleB, domain 1 | 0.50 | 38.0 | 3.62e-01 | 85.7% | 98.8% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3499876 | 574.1.1.0 ↗ | alpha bundles › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp module (SWAP domain) | 0.64 | 43.0 | 4.14e-01 | 71.4% | 73.3% |
| 3818462 | 101.1.2.137 ↗ | alpha arrays › HTH › HTH › winged helix domain › OST-HTH | 0.62 | 48.0 | 4.30e-01 | 85.7% | 91.1% |
| 3227729 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.61 | 49.0 | 4.19e-01 | 90.5% | 69.5% |
| 3999174 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 39.0 | 3.97e-01 | 71.4% | 81.5% |
| 360221 | 509.1.1.3 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › USH1C_N | 0.57 | 47.0 | 4.42e-01 | 98.4% | 77.5% |
| 3876892 | 375.2.1.0 ↗ | few secondary structure elements › Rubredoxin-like › YfgJ-like › YfgJ-like | 0.56 | 39.0 | 3.69e-01 | 82.5% | 58.7% |
| 4204830 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.56 | 40.0 | 3.89e-01 | 79.4% | 68.6% |
| 4125245 | 101.1.2.813 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF772 | 0.54 | 43.0 | 3.74e-01 | 93.7% | 80.0% |
| 5031874 | 3962.1.1.0 ↗ | alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit | 0.52 | 37.0 | 3.23e-01 | 90.5% | 48.0% |
| 3638704 | 2003.1.5.97 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_32 | 0.52 | 43.0 | 2.62e-01 | 100.0% | 19.1% |