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IMGVR_UViG_3300018430_001996-3300018430-Ga0187902_100562086
Arc-VirIMGVR_UViG_3300018430_001996-3300018430-Ga0187902_100562086
Identity
- Kingdom:
- archaea
Quality
95.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-133
Domain cluster:
rep: IMGVR_UViG_3300026962_000012-3300026962-Ga0207813_10064510__D4-141
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26348.1 best | SRA_ScoMcrA | 39.3 | 8.20e-10 | 96.2% | 83.8% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4f0qD01 | 2.30.280.20 | Mainly Beta › Roll › PUA domain-like › | 0.81 | 76.0 | 5.99e-01 | 100.0% | 74.9% |
| 3q0bX00 | 2.30.280.10 | Mainly Beta › Roll › PUA domain-like › SRA-YDG | 0.80 | 76.0 | 7.26e-01 | 100.0% | 90.5% |
| 5ejlA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.68 | 44.0 | 4.56e-01 | 81.7% | 69.4% |
| 2zyzC00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.64 | 39.0 | 4.47e-01 | 74.0% | 83.3% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.62 | 39.0 | 4.57e-01 | 91.6% | 91.2% |
| 4binA01 | 2.60.40.3500 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 35.0 | 3.68e-01 | 81.7% | 70.7% |
| 4da2A02 | 3.40.1350.60 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.52 | 37.0 | 3.59e-01 | 74.0% | 96.1% |
| 3c0wA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 32.0 | 3.31e-01 | 99.2% | 65.8% |
| 2ab5B01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 32.0 | 3.26e-01 | 76.3% | 62.5% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4981806 | 1.1.9.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SRA_ScoMcrA | 0.88 | 83.0 | 8.20e-01 | 97.7% | 94.8% |
| 4964155 | 1.1.9.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SRA_ScoMcrA | 0.87 | 83.0 | 8.11e-01 | 100.0% | 95.0% |
| 3831982 | 1.1.9.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA | 0.83 | 79.0 | 6.60e-01 | 100.0% | 68.6% |
| 2491440 | 1.1.9.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SRA_ScoMcrA | 0.82 | 76.0 | 6.88e-01 | 97.7% | 75.1% |
| 4032612 | 1.1.9.45 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF3427 | 0.82 | 77.0 | 7.31e-01 | 99.2% | 90.8% |
| 224015 | 1.1.9.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › RE_AspBHI_N | 0.82 | 77.0 | 6.01e-01 | 100.0% | 73.7% |
| 2449257 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.82 | 77.0 | 5.76e-01 | 100.0% | 44.0% |
| 4219689 | 1.1.9.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA | 0.82 | 77.0 | 6.32e-01 | 100.0% | 63.7% |
| 5059322 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.79 | 74.0 | 6.97e-01 | 100.0% | 94.2% |
| 3977109 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.78 | 74.0 | 7.01e-01 | 100.0% | 93.3% |
| 4949262 | 1.1.9.45 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF3427 | 0.77 | 73.0 | 5.76e-01 | 100.0% | 56.8% |
| 3635385 | 1.1.9.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA | 0.74 | 69.0 | 5.58e-01 | 100.0% | 55.8% |
| 3690148 | 1.1.9.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA | 0.74 | 69.0 | 5.96e-01 | 100.0% | 71.3% |
| 4640974 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.67 | 45.0 | 4.68e-01 | 82.4% | 73.3% |
| 5011455 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.65 | 38.0 | 4.65e-01 | 73.3% | 93.8% |
| 4287081 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.64 | 42.0 | 4.38e-01 | 81.7% | 69.6% |
| 3939027 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.62 | 39.0 | 2.72e-01 | 71.0% | 19.9% |
| 3252646 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.59 | 39.0 | 3.86e-01 | 74.8% | 62.9% |
| 5029542 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.57 | 37.0 | 4.10e-01 | 80.2% | 81.9% |
| 4961857 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.57 | 39.0 | 3.77e-01 | 77.1% | 61.4% |
| 1307482 | 319.3.1.1 ↗ | beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › AMIN | 0.55 | 35.0 | 3.72e-01 | 81.7% | 71.1% |
| 4930963 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.54 | 32.0 | 3.97e-01 | 99.2% | 100.0% |
| 4409022 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.52 | 32.0 | 3.38e-01 | 99.2% | 65.8% |
| 3822590 | 2008.1.1.77 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C | 0.52 | 38.0 | 4.07e-01 | 92.4% | 89.6% |
| 3413902 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.51 | 35.0 | 3.91e-01 | 74.0% | 90.2% |
| 4344201 | 864.1.1.0 ↗ | a+b two layers › DLC › DLC › DLC | 0.51 | 28.0 | 3.26e-01 | 81.7% | 75.6% |