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IMGVR_UViG_3300018490_000273-3300018490-Ga0193584_10694837
Arc-VirIMGVR_UViG_3300018490_000273-3300018490-Ga0193584_10694837
Identity
- Kingdom:
- archaea
Quality
77.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-68
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1whuA00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.73 | 54.0 | 4.45e-01 | 81.8% | 44.2% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.72 | 54.0 | 4.35e-01 | 81.8% | 43.5% |
| 3lcvB01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.68 | 51.0 | 5.09e-01 | 92.7% | 80.7% |
| 1cmbA00 | 1.10.140.10 | Mainly Alpha › Orthogonal Bundle › MET Apo-Repressor, subunit A › MET Apo-Repressor, subunit A | 0.68 | 52.0 | 4.26e-01 | 92.7% | 44.2% |
| 7kznP01 | 3.30.740.10 | Alpha Beta › 2-Layer Sandwich › Protein Inhibitor Of Neuronal Nitric Oxide Synthase › Protein Inhibitor Of Neuronal Nitric Oxide Synthase; | 0.68 | 48.0 | 4.06e-01 | 74.5% | 46.2% |
| 2mqaA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.67 | 52.0 | 4.14e-01 | 90.9% | 88.8% |
| 3fysA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.66 | 48.0 | 3.51e-01 | 78.2% | 41.2% |
| 4ei7A02 | 3.40.50.1440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain | 0.63 | 52.0 | 3.55e-01 | 100.0% | 87.2% |
| 2q74A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.62 | 47.0 | 3.58e-01 | 81.8% | 36.4% |
| 3s64A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.61 | 46.0 | 4.13e-01 | 87.3% | 56.8% |
| 3t69A02 | 3.30.420.310 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain | 0.61 | 46.0 | 3.16e-01 | 94.5% | 21.2% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.61 | 46.0 | 4.15e-01 | 85.5% | 65.8% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.60 | 49.0 | 4.40e-01 | 94.5% | 70.4% |
| 2oeeA00 | 1.20.1500.10 | Mainly Alpha › Up-down Bundle › YheA-like fold › YheA/YmcA-like | 0.59 | 47.0 | 3.89e-01 | 85.5% | 52.2% |
| 3l4aA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.59 | 49.0 | 3.95e-01 | 100.0% | 57.0% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.57 | 39.0 | 3.87e-01 | 70.9% | 79.3% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.57 | 45.0 | 3.47e-01 | 89.1% | 86.5% |
| 1w9rA00 | 1.20.58.440 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › choline binding protein A | 0.56 | 38.0 | 3.02e-01 | 72.7% | 68.1% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 44.0 | 4.04e-01 | 94.5% | 67.9% |
| 3bemB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.55 | 41.0 | 2.74e-01 | 80.0% | 21.1% |
| 4nooB00 | 1.10.8.1160 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.53 | 41.0 | 3.61e-01 | 94.5% | 73.7% |
| 3da1A03 | 1.10.8.870 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Alpha-glycerophosphate oxidase, cap domain | 0.52 | 40.0 | 3.16e-01 | 89.1% | 45.6% |
| 2fgeA01 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.52 | 42.0 | 2.84e-01 | 100.0% | 85.3% |
| 1dqeA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.51 | 45.0 | 3.38e-01 | 100.0% | 67.9% |
| 1fpoC02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.51 | 41.0 | 3.48e-01 | 89.1% | 56.0% |
| 3u61D03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.50 | 44.0 | 3.75e-01 | 100.0% | 87.9% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3250198 | 604.1.1.119 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › ORMDL | 0.78 | 57.0 | 4.72e-01 | 80.0% | 44.0% |
| 3935110 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.71 | 59.0 | 5.44e-01 | 90.9% | 74.3% |
| 3274187 | 316.1.1.11 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GrpB | 0.70 | 56.0 | 3.96e-01 | 89.1% | 29.4% |
| 3996155 | 864.1.1.1 ↗ | a+b two layers › DLC › DLC › DLC › Dynein_light | 0.68 | 49.0 | 4.83e-01 | 76.4% | 73.3% |
| 3617903 | 864.1.1.1 ↗ | a+b two layers › DLC › DLC › DLC › Dynein_light | 0.68 | 51.0 | 4.31e-01 | 80.0% | 48.9% |
| 4038683 | 103.1.1.5 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › FmrO | 0.68 | 51.0 | 5.07e-01 | 92.7% | 78.3% |
| 1124142 | 3788.1.1.1 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › VPR | 0.65 | 54.0 | 4.56e-01 | 100.0% | 55.2% |
| 3842317 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.64 | 48.0 | 3.36e-01 | 92.7% | 22.8% |
| 3617495 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.63 | 45.0 | 3.96e-01 | 74.5% | 54.4% |
| 409651 | 108.2.1.1 ↗ | alpha arrays › EF-hand › Insect pheromone/odorant-binding proteins › Insect pheromone/odorant-binding proteins › PBP_GOBP | 0.59 | 49.0 | 4.01e-01 | 100.0% | 60.0% |
| 4990528 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.58 | 43.0 | 3.89e-01 | 89.1% | 55.3% |
| 3563272 | 375.1.1.202 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Tmemb_55A | 0.58 | 40.0 | 4.05e-01 | 72.7% | 78.2% |
| 3617842 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.57 | 42.0 | 3.81e-01 | 80.0% | 58.7% |
| 3202460 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.56 | 43.0 | 4.07e-01 | 89.1% | 81.4% |
| 3513004 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.52 | 45.0 | 3.22e-01 | 96.4% | 49.7% |