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IMGVR_UViG_3300018878_005073-3300018878-Ga0187910_100491237

Arc-Vir

IMGVR_UViG_3300018878_005073-3300018878-Ga0187910_100491237

Quality

92.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 43-125
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01592.22 best NifU_N 103.7 1.20e-29 100.0% 65.3%
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q48A00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.89 83.0 6.91e-01 100.0% 61.2%
1su0B00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.85 74.0 6.19e-01 92.8% 69.1%
6a6fA00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.84 72.0 6.02e-01 91.6% 67.6%
4it1B01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.81 71.0 5.70e-01 94.0% 83.0%
2og9A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.75 66.0 5.64e-01 95.2% 86.2%
5xd7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.75 66.0 5.65e-01 95.2% 91.3%
1bqgA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.74 64.0 5.38e-01 95.2% 81.2%
3t8qB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.73 64.0 5.74e-01 95.2% 86.1%
4ix7A00 1.10.10.2590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BEN domain 0.71 53.0 4.75e-01 78.3% 78.9%
4jhmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.71 62.0 5.49e-01 95.2% 99.1%
3rcyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.70 59.0 4.96e-01 92.8% 78.0%
1xl3C00 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.67 50.0 4.85e-01 78.3% 81.3%
4h9nC00 1.20.58.2170 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 57.0 4.35e-01 96.4% 41.0%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.66 47.0 4.56e-01 74.7% 70.2%
2nrlA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.66 49.0 4.10e-01 79.5% 98.6%
2vixA03 1.20.1280.240 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.66 47.0 4.29e-01 75.9% 60.2%
4e4fA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.66 54.0 4.65e-01 94.0% 75.9%
1gvnD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 47.0 3.34e-01 78.3% 49.3%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.63 47.0 3.88e-01 79.5% 79.6%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.62 46.0 4.27e-01 80.7% 75.0%
2l3lA01 1.20.58.1250 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain 0.62 45.0 4.15e-01 77.1% 71.7%
3ktdD02 1.10.3660.10 Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain 0.61 46.0 4.21e-01 79.5% 77.1%
3tacB01 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.61 55.0 4.76e-01 100.0% 66.1%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.61 47.0 4.43e-01 96.4% 69.0%
3u3iA02 1.20.58.1110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 47.0 4.31e-01 83.1% 73.1%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 41.0 3.81e-01 94.0% 55.2%
2o57A01 1.10.287.840 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mycolic acid cyclopropane synthase domain like 0.60 45.0 4.17e-01 79.5% 90.5%
5c8gB00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.60 50.0 4.51e-01 92.8% 94.9%
2gz4A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.60 52.0 4.01e-01 98.8% 56.5%
2b1eA01 1.20.58.1150 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 43.0 4.32e-01 75.9% 84.9%
2cqnA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.60 44.0 4.50e-01 78.3% 87.0%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.59 42.0 3.52e-01 95.2% 43.0%
1irxA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 42.0 4.10e-01 77.1% 80.6%
8d7hD01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.58 44.0 3.48e-01 80.7% 76.3%
7ccmB01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.58 42.0 3.62e-01 79.5% 53.1%
3fghA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.57 44.0 4.84e-01 94.0% 100.0%
2gytA01 1.10.287.2070 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 39.0 4.09e-01 81.9% 83.1%
2l4mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 4.40e-01 75.9% 95.7%
4p47A00 3.40.190.170 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 0.56 49.0 3.36e-01 100.0% 75.3%
3e39A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.56 48.0 3.82e-01 95.2% 74.9%
2freA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.56 47.0 3.63e-01 95.2% 68.3%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.54 39.0 4.10e-01 96.4% 85.1%
4dwpA01 6.10.140.1780 Special › Helix non-globular › Helix Hairpins › 0.54 44.0 4.35e-01 94.0% 94.6%
3bm1A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.53 47.0 3.66e-01 97.6% 59.9%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 41.0 4.26e-01 90.4% 98.7%
6z4xA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 38.0 3.19e-01 80.7% 69.7%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.51 40.0 4.12e-01 92.8% 88.6%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 43.0 3.64e-01 100.0% 63.6%
2xryA03 1.10.579.10 Mainly Alpha › Orthogonal Bundle › DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3 › DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.50 41.0 3.54e-01 94.0% 75.9%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4947407 244.3.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N 1.00 96.0 8.19e-01 100.0% 68.3%
4930492 244.3.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N 0.99 97.0 7.59e-01 100.0% 57.3%
4944250 244.3.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N 0.99 97.0 7.58e-01 100.0% 56.7%
5034214 244.3.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N 0.99 90.0 7.48e-01 95.2% 60.0%
4047026 244.3.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N 0.99 94.0 7.89e-01 97.6% 65.6%
4939883 244.3.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N 0.99 94.0 7.54e-01 98.8% 57.9%
3593312 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.98 95.0 7.86e-01 100.0% 63.8%
4228973 244.3.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N 0.97 91.0 7.78e-01 97.6% 66.7%
3385882 244.3.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N 0.97 92.0 7.41e-01 97.6% 62.9%
4982616 244.3.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N 0.97 92.0 7.31e-01 100.0% 55.9%
4987079 244.3.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N 0.94 87.0 7.49e-01 97.6% 66.7%
3655800 101.1.17.31 alpha arrays › HTH › HTH › FF domain › NifU_N 0.92 68.0 7.67e-01 78.3% 98.5%
5039190 244.3.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N 0.91 83.0 7.08e-01 96.4% 64.8%
4941861 244.3.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N 0.89 83.0 7.10e-01 98.8% 65.6%
4927955 244.3.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N 0.89 84.0 6.95e-01 100.0% 62.2%
4143086 244.3.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N 0.86 77.0 6.31e-01 95.2% 67.9%
3659140 244.3.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N 0.85 75.0 7.65e-01 92.8% 100.0%
3589518 244.3.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N 0.85 76.0 6.13e-01 96.4% 64.7%
3674178 101.1.1.412 alpha arrays › HTH › HTH › Three-helical HTH › NifU_N 0.80 59.0 6.22e-01 77.1% 85.3%
5000916 244.3.1.4 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › Lip_prot_lig_C 0.78 70.0 6.57e-01 98.8% 82.0%
5001690 3276.1.1.0 alpha arrays › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor 0.72 53.0 5.73e-01 78.3% 91.4%
4624818 621.1.1.0 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.71 52.0 5.10e-01 78.3% 94.4%
3455585 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.69 54.0 5.11e-01 84.3% 95.0%
4622237 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.69 53.0 5.14e-01 84.3% 100.0%
3487665 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.67 47.0 5.29e-01 90.4% 100.0%
4223376 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.67 58.0 5.43e-01 97.6% 100.0%
4183744 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.67 55.0 5.24e-01 91.6% 100.0%
5005257 2.21.1.0 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.67 50.0 4.00e-01 80.7% 40.6%
4977808 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.67 46.0 4.94e-01 71.1% 98.6%
3274434 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.66 46.0 4.62e-01 73.5% 72.9%
4251267 192.7.1.3 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N 0.65 48.0 4.44e-01 77.1% 77.1%
4931030 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.65 55.0 5.00e-01 96.4% 100.0%
4591364 8002.1.1.3 alpha bundles › Zn-binding domain in glutaminyl-tRNA synthetase › Zn-binding domain in glutaminyl-tRNA synthetase › Zn-binding domain in glutaminyl-tRNA synthetase › Anticodon_2 0.65 48.0 3.75e-01 78.3% 40.6%
5004551 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.64 50.0 5.22e-01 90.4% 93.3%
3581597 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.63 49.0 4.00e-01 84.3% 93.9%
3185014 3985.1.1.0 alpha bundles › CFEM domain (contains eight cysteines) › CFEM domain (contains eight cysteines) › CFEM domain (contains eight cysteines) 0.63 54.0 5.14e-01 97.6% 93.0%
3269592 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.62 43.0 4.34e-01 73.5% 75.3%
5060758 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.61 53.0 3.46e-01 97.6% 27.9%
3798489 164.1.1.0 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II 0.61 45.0 4.16e-01 79.5% 72.7%
4981270 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 52.0 3.45e-01 97.6% 28.4%
3930777 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.61 47.0 3.78e-01 83.1% 93.9%
3964745 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 44.0 4.51e-01 95.2% 81.2%
4232558 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.61 51.0 4.86e-01 94.0% 100.0%
3983938 608.1.1.0 alpha arrays › AhpD-like › AhpD-like › AhpD-like 0.60 47.0 3.75e-01 84.3% 70.0%
5001160 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.60 48.0 4.16e-01 88.0% 58.5%
3706380 6088.1.1.0 alpha arrays › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A 0.58 47.0 4.47e-01 89.2% 87.0%
3701318 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.58 40.0 4.58e-01 95.2% 100.0%
3264353 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.57 42.0 4.55e-01 86.7% 100.0%
3221092 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.56 48.0 3.94e-01 96.4% 90.3%
3172542 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.55 43.0 4.34e-01 95.2% 82.4%
5002309 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.54 47.0 3.72e-01 97.6% 49.7%
3430065 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.54 37.0 2.85e-01 72.3% 44.9%
3405891 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.53 44.0 4.20e-01 96.4% 77.9%
4000466 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.53 43.0 4.22e-01 96.4% 81.1%
5000079 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.53 41.0 3.06e-01 95.2% 31.1%
3757366 190.1.1.3 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.52 43.0 4.40e-01 96.4% 92.5%
1504794 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.51 41.0 3.76e-01 91.6% 73.5%
3315608 185.1.1.1 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl 0.51 39.0 3.67e-01 84.3% 75.2%
4315512 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.50 45.0 3.88e-01 100.0% 88.5%