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IMGVR_UViG_3300019373_000200-3300019373-Ga0187895_100401510

Arc-Vir

IMGVR_UViG_3300019373_000200-3300019373-Ga0187895_100401510

Quality

74.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-58
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1h99A02 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.77 58.0 4.62e-01 78.9% 91.5%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.77 56.0 5.93e-01 78.9% 98.0%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 59.0 5.52e-01 87.7% 74.0%
2q0iA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.73 63.0 4.00e-01 100.0% 45.3%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 59.0 5.05e-01 93.0% 60.9%
2cg5B00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.70 47.0 4.44e-01 70.2% 81.7%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.67 52.0 4.71e-01 87.7% 77.8%
3me5A01 1.10.260.140 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › 0.65 45.0 4.33e-01 75.4% 64.1%
3s4lA00 1.10.3210.30 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › 0.64 53.0 3.76e-01 98.2% 80.2%
4jb3A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 50.0 4.75e-01 91.2% 81.9%
4eekA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 51.0 4.95e-01 91.2% 78.8%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 51.0 5.08e-01 94.7% 93.3%
4gx0A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 43.0 3.58e-01 71.9% 43.7%
5o60H02 3.10.430.100 Alpha Beta › Roll › Ribosomal Protein L9; domain 2 › Ribosomal protein L9, C-terminal domain 0.61 52.0 4.54e-01 96.5% 93.1%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.58 43.0 4.04e-01 82.5% 80.0%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 44.0 4.10e-01 87.7% 73.3%
2h21B01 3.90.1410.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 1 › set domain protein methyltransferase, domain 1 0.57 43.0 2.85e-01 84.2% 53.7%
2eggB01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.56 45.0 3.43e-01 91.2% 84.0%
1gakA00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.56 47.0 3.66e-01 96.5% 63.5%
1wviA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.56 47.0 3.50e-01 93.0% 70.3%
3ru0A01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.56 46.0 3.54e-01 93.0% 92.6%
3oouA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 44.0 4.45e-01 91.2% 98.2%
4gp6A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 44.0 3.16e-01 100.0% 53.2%
ECOD (85)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4019326 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.91 70.0 7.12e-01 80.7% 85.5%
3692546 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.90 70.0 7.42e-01 82.5% 96.0%
3684956 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.90 80.0 7.59e-01 96.5% 83.1%
4016548 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.89 76.0 7.74e-01 93.0% 94.5%
3721082 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.88 72.0 7.36e-01 87.7% 92.7%
3203068 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.88 75.0 7.65e-01 94.7% 94.5%
3730184 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.88 75.0 7.71e-01 93.0% 96.4%
4978898 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.87 64.0 7.03e-01 77.2% 100.0%
4640221 101.1.6.32 alpha arrays › HTH › HTH › TrpR › DUF5338 0.87 77.0 7.20e-01 98.2% 80.0%
3721026 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.87 69.0 7.31e-01 86.0% 100.0%
3693971 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.86 74.0 7.54e-01 94.7% 96.4%
3720398 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.86 76.0 7.55e-01 96.5% 91.7%
4558866 101.1.1.465 alpha arrays › HTH › HTH › Three-helical HTH › DUF5338 0.86 70.0 7.44e-01 87.7% 100.0%
3901968 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.86 58.0 6.69e-01 71.9% 100.0%
3689691 101.1.10.61 alpha arrays › HTH › HTH › Cyclin-like › Clr5 0.86 76.0 6.58e-01 96.5% 68.2%
3191996 101.1.2.480 alpha arrays › HTH › HTH › winged helix domain › Clr5 0.86 72.0 7.36e-01 96.5% 94.5%
4019525 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.85 74.0 7.32e-01 96.5% 90.0%
3910504 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.85 64.0 6.76e-01 80.7% 92.0%
3590835 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.85 61.0 6.71e-01 75.4% 97.8%
3590733 101.1.2.489 alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.84 61.0 6.44e-01 75.4% 88.0%
3693532 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.84 78.0 7.44e-01 100.0% 92.3%
3961039 101.1.3.13 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Transposase_mut 0.84 61.0 6.70e-01 78.9% 97.8%
3980764 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 62.0 6.78e-01 82.5% 100.0%
3908865 101.1.2.536 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.84 65.0 6.68e-01 84.2% 89.1%
3909922 101.1.1.12 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.83 65.0 6.84e-01 84.2% 98.0%
3732993 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.83 73.0 7.18e-01 96.5% 91.7%
3687180 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 67.0 7.06e-01 89.5% 100.0%
3732543 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.83 71.0 6.84e-01 94.7% 83.1%
4995581 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.83 64.0 5.29e-01 84.2% 54.0%
5049604 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 66.0 6.69e-01 86.0% 90.9%
3884711 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 72.0 6.89e-01 100.0% 84.6%
3958338 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.82 60.0 6.61e-01 84.2% 100.0%
3723123 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 64.0 6.30e-01 86.0% 85.0%
3632862 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 70.0 5.60e-01 100.0% 50.0%
3724068 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 68.0 6.97e-01 96.5% 98.2%
3740038 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.81 60.0 6.37e-01 80.7% 94.0%
4026717 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 64.0 6.00e-01 86.0% 75.7%
5017698 101.1.1.187 alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.80 67.0 6.47e-01 93.0% 95.4%
4105352 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.80 63.0 3.99e-01 86.0% 97.8%
4959187 101.1.2.489 alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.80 59.0 6.26e-01 80.7% 96.0%
3198858 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 68.0 6.42e-01 100.0% 78.6%
3740014 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 67.0 6.27e-01 93.0% 97.1%
3326259 1091.1.1.0 alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.79 56.0 5.90e-01 75.4% 92.0%
3487537 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 62.0 6.47e-01 86.0% 100.0%
4952808 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 62.0 6.29e-01 87.7% 94.5%
3962597 101.1.3.13 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Transposase_mut 0.78 61.0 5.88e-01 86.0% 75.4%
3958041 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 61.0 5.87e-01 86.0% 75.4%
3957316 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.77 61.0 5.86e-01 86.0% 75.4%
3970076 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 61.0 6.43e-01 93.0% 100.0%
5013811 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 63.0 6.43e-01 93.0% 92.7%
4958195 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 62.0 6.37e-01 91.2% 96.4%
5070907 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 56.0 6.05e-01 86.0% 100.0%
3960420 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.76 69.0 5.30e-01 100.0% 52.8%
4274627 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.76 64.0 6.29e-01 93.0% 88.3%
3203378 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 67.0 6.47e-01 100.0% 90.8%
4129575 101.1.1.187 alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.76 67.0 6.48e-01 100.0% 95.4%
3962579 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 68.0 5.07e-01 100.0% 77.9%
3933926 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 66.0 6.37e-01 100.0% 86.2%
4014657 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 65.0 6.67e-01 96.5% 100.0%
3488744 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.75 66.0 6.32e-01 98.2% 100.0%
5021354 101.1.2.619 alpha arrays › HTH › HTH › winged helix domain › HTH_33 0.75 60.0 5.81e-01 89.5% 78.5%
3492110 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 65.0 6.30e-01 98.2% 100.0%
5003693 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 62.0 6.03e-01 94.7% 83.1%
5008720 101.1.1.548 alpha arrays › HTH › HTH › Three-helical HTH › HTH_32 0.74 62.0 5.97e-01 94.7% 84.6%
5007660 101.1.1.187 alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.74 62.0 6.00e-01 94.7% 84.6%
3455407 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 60.0 6.12e-01 91.2% 100.0%
3987909 138.1.1.9 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C 0.74 65.0 4.94e-01 100.0% 67.4%
4941699 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 61.0 5.60e-01 93.0% 74.7%
3575777 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.73 55.0 5.72e-01 82.5% 98.0%
3617137 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 58.0 5.96e-01 89.5% 96.4%
3366917 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.73 61.0 6.18e-01 94.7% 100.0%
4966213 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 60.0 5.84e-01 94.7% 84.6%
3467989 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 62.0 6.13e-01 98.2% 96.7%
3465761 708.1.1.7 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.72 58.0 4.44e-01 89.5% 77.7%
4014593 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 59.0 6.01e-01 93.0% 96.4%
4968187 101.1.2.619 alpha arrays › HTH › HTH › winged helix domain › HTH_33 0.71 58.0 5.63e-01 93.0% 93.8%
3334149 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 57.0 5.87e-01 91.2% 96.4%
3454767 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 60.0 6.08e-01 96.5% 100.0%
3741291 592.1.1.6 alpha arrays › PWI domain-like › PWI domain › PWI domain › Nab2 0.70 59.0 5.26e-01 93.0% 70.0%
3341091 101.35.1.6 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › A_thal_3526 0.69 56.0 5.40e-01 91.2% 89.2%
3960055 592.1.1.14 alpha arrays › PWI domain-like › PWI domain › PWI domain › Transposase_mut 0.69 58.0 4.50e-01 96.5% 85.4%
3340005 101.1.2.472 alpha arrays › HTH › HTH › winged helix domain › A_thal_3526 0.65 54.0 4.78e-01 98.2% 67.0%
3450729 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 52.0 4.92e-01 96.5% 80.0%
5028090 610.3.1.0 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain 0.59 50.0 3.85e-01 100.0% 75.2%
5002539 101.1.2.906 alpha arrays › HTH › HTH › winged helix domain › DUF1016_N 0.59 49.0 4.17e-01 98.2% 62.9%
D2 medium residues 117-267
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wdzA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.66 54.0 4.69e-01 88.1% 72.3%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 47.0 4.01e-01 72.8% 46.4%
5y06A01 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 45.0 3.90e-01 91.4% 68.6%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5007978 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.75 50.0 5.27e-01 72.2% 74.8%
3565959 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.74 68.0 5.87e-01 98.7% 72.4%
3917938 4177.1.1.5 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 0.67 51.0 4.58e-01 80.1% 68.4%