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IMGVR_UViG_3300019374_000049-3300019374-Ga0187897_10016021

Arc-Vir

IMGVR_UViG_3300019374_000049-3300019374-Ga0187897_10016021

Identity

Kingdom:
archaea

Quality

79.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-86
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xoiA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.71 59.0 3.52e-01 98.2% 20.0%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.70 59.0 5.88e-01 100.0% 94.8%
3e1sA01 1.10.10.2220 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.69 60.0 5.15e-01 100.0% 75.8%
2lbfB01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.69 51.0 4.88e-01 100.0% 68.1%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.67 58.0 4.41e-01 100.0% 90.0%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.67 49.0 4.32e-01 98.2% 52.2%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 5.05e-01 100.0% 91.1%
1aabA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.63 44.0 3.91e-01 73.7% 88.0%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.63 54.0 5.34e-01 100.0% 100.0%
2vxdA00 1.10.10.2100 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nucleophosmin, C-terminal domain 0.63 50.0 5.18e-01 100.0% 94.4%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.62 50.0 4.89e-01 100.0% 94.0%
5fcxA00 1.10.2090.10 Mainly Alpha › Orthogonal Bundle › orange carotenoid protein, domain 2 › Orange carotenoid-binding protein, N-terminal domain 0.62 53.0 4.06e-01 100.0% 41.0%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.60 39.0 3.44e-01 93.0% 44.2%
7ocsB01 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.60 51.0 3.73e-01 100.0% 37.6%
5bxhA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.60 37.0 3.14e-01 100.0% 35.6%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 51.0 4.61e-01 100.0% 70.7%
1uj8A00 1.10.10.600 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IscX-like 0.60 48.0 4.54e-01 100.0% 75.3%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.60 52.0 4.49e-01 100.0% 77.2%
4ehsA00 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.58 48.0 3.74e-01 91.2% 68.5%
1mw9X02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.58 47.0 3.57e-01 100.0% 39.3%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.58 50.0 4.05e-01 100.0% 81.6%
2wcrB00 3.10.129.140 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Helicobacter TNF-alpha-Inducing protein 0.57 47.0 3.66e-01 100.0% 64.4%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 42.0 3.88e-01 100.0% 60.3%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 47.0 4.06e-01 98.2% 59.4%
3mdmA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.56 48.0 2.90e-01 100.0% 38.6%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 48.0 3.81e-01 94.7% 74.5%
3vayA02 1.20.120.1600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.55 46.0 4.12e-01 100.0% 73.6%
1ac1A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 47.0 3.26e-01 96.5% 100.0%
1u5pA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 47.0 3.82e-01 96.5% 76.9%
4gpkB01 1.25.40.1000 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 43.0 3.54e-01 100.0% 49.5%
1te2A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 43.0 4.13e-01 100.0% 80.6%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.53 42.0 3.86e-01 100.0% 65.1%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.52 38.0 3.46e-01 80.7% 57.0%
2q00B00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.51 41.0 3.38e-01 98.2% 50.8%
3qnmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 41.0 3.69e-01 100.0% 81.1%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.50 37.0 3.38e-01 87.7% 73.0%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3209226 2003.1.2.17 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase 0.76 69.0 4.13e-01 100.0% 16.9%
3474421 101.1.2.365 ↗ alpha arrays › HTH › HTH › winged helix domain › DEK_C 0.73 56.0 5.32e-01 100.0% 70.0%
3882320 101.1.17.19 ↗ alpha arrays › HTH › HTH › FF domain › DEK_C 0.73 56.0 5.60e-01 100.0% 81.7%
3792105 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.72 56.0 5.56e-01 100.0% 81.7%
3903431 101.35.1.29 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › DEK_C 0.72 55.0 5.50e-01 100.0% 81.7%
4932388 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.72 59.0 5.49e-01 100.0% 72.0%
3764771 101.1.2.365 ↗ alpha arrays › HTH › HTH › winged helix domain › DEK_C 0.71 56.0 5.69e-01 100.0% 90.9%
5012907 3860.1.1.0 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.71 61.0 4.13e-01 100.0% 27.3%
3840404 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.71 55.0 5.48e-01 100.0% 83.3%
3489070 4030.1.1.0 ↗ alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz 0.71 54.0 5.29e-01 100.0% 76.9%
3806111 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.70 54.0 5.28e-01 100.0% 76.9%
4957991 181.1.1.33 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SMC_ScpA 0.69 59.0 5.35e-01 100.0% 92.5%
3386119 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.69 60.0 4.01e-01 98.2% 41.8%
3444283 101.1.2.365 ↗ alpha arrays › HTH › HTH › winged helix domain › DEK_C 0.69 53.0 5.45e-01 100.0% 92.6%
3333032 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.68 53.0 5.28e-01 100.0% 84.5%
3507881 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.68 54.0 5.52e-01 100.0% 94.5%
3886349 195.1.1.0 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like 0.68 54.0 3.99e-01 100.0% 31.5%
4513921 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.68 54.0 5.41e-01 100.0% 86.7%
3174373 101.1.2.780 ↗ alpha arrays › HTH › HTH › winged helix domain › PF31199 0.68 55.0 5.01e-01 100.0% 68.0%
3475816 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.68 55.0 5.61e-01 100.0% 96.4%
3313260 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.67 54.0 5.17e-01 100.0% 75.7%
3632341 101.1.1.176 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DEK_C 0.67 54.0 5.30e-01 100.0% 83.1%
3814488 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.67 55.0 4.52e-01 100.0% 49.1%
3735853 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.67 53.0 5.29e-01 100.0% 88.3%
4983508 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 48.0 4.60e-01 98.2% 65.7%
3932917 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 4.85e-01 100.0% 94.4%
3616203 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 56.0 4.84e-01 100.0% 60.0%
4438754 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.65 52.0 5.30e-01 100.0% 96.4%
3487368 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.65 56.0 5.45e-01 100.0% 90.8%
3784813 621.1.1.7 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › EMC6 0.64 54.0 4.66e-01 100.0% 72.4%
4928472 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.64 46.0 4.25e-01 98.2% 57.5%
3579249 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 55.0 4.86e-01 100.0% 67.1%
3496552 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.64 43.0 3.75e-01 71.9% 78.9%
3419147 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.62 43.0 3.73e-01 73.7% 48.9%
311021 101.22.1.1 ↗ alpha arrays › HTH › IscX-like (DEPRECATED) › IscX-like (DEPRECATED) › Fe-S_assembly (DEPRECATED) 0.62 53.0 5.08e-01 100.0% 84.8%
4972573 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 52.0 3.23e-01 100.0% 16.0%
4001707 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.62 53.0 4.73e-01 100.0% 72.9%
5002108 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 50.0 4.81e-01 100.0% 95.7%
4020971 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 44.0 2.93e-01 98.2% 18.4%
3506153 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.60 40.0 3.65e-01 73.7% 49.4%
4974395 601.7.1.34 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF4129 0.59 47.0 4.00e-01 100.0% 52.0%
4927051 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 48.0 4.63e-01 100.0% 82.9%
3929725 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.59 50.0 4.31e-01 100.0% 87.4%
4938693 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.59 48.0 4.26e-01 98.2% 62.4%
3700785 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 45.0 4.39e-01 100.0% 83.1%
4258385 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.55 37.0 3.50e-01 73.7% 54.7%
3997887 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.55 38.0 3.77e-01 80.7% 67.7%
3738109 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.55 39.0 3.42e-01 78.9% 58.9%
3470186 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.54 39.0 3.45e-01 78.9% 50.0%
4673895 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.54 39.0 3.32e-01 80.7% 45.0%
3961801 601.7.1.34 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF4129 0.53 41.0 3.58e-01 98.2% 68.2%
4954669 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.52 44.0 4.11e-01 100.0% 84.0%