←Back to structures

IMGVR_UViG_3300019374_000214-3300019374-Ga0187897_100529210

Arc-Vir

IMGVR_UViG_3300019374_000214-3300019374-Ga0187897_100529210

Identity

Kingdom:
archaea

Quality

66.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 230-333
PDB
D2 medium residues 62-75_122-229
PDB
Domain cluster: rep: SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00204__D131-209_227-253_406-442
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3w1eA03 2.40.10.410 Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain 0.55 31.0 3.49e-01 79.5% 71.9%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.55 25.0 3.21e-01 82.8% 74.2%
3ci0J02 2.10.70.20 Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains 0.54 20.0 2.95e-01 77.9% 76.0%
1dw9A02 3.30.1160.10 Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain 0.53 21.0 2.75e-01 96.7% 61.8%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 31.0 3.77e-01 84.4% 98.6%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 37.0 3.55e-01 73.0% 92.8%
2cy2A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 35.0 3.19e-01 72.1% 72.4%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.50 27.0 3.50e-01 72.1% 96.9%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1557493 4056.1.1.6 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › P23-45_portal_barrel 0.76 50.0 6.05e-01 77.9% 100.0%
5082725 4056.1.1.9 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_portal_2 0.65 50.0 5.51e-01 80.3% 100.0%
3795553 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.63 28.0 3.14e-01 74.6% 51.6%
4034609 4056.1.1.1 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 0.59 45.0 4.72e-01 79.5% 100.0%
3273083 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.58 29.0 3.32e-01 73.0% 62.1%
3669771 80.1.1.1 ↗ beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain › Fe-S_biosyn 0.56 26.0 2.77e-01 76.2% 47.7%
4231115 80.1.1.1 ↗ beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain › Fe-S_biosyn 0.56 25.0 2.73e-01 76.2% 46.7%
5010503 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 29.0 3.27e-01 82.8% 68.4%
3271031 80.1.1.1 ↗ beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain › Fe-S_biosyn 0.53 26.0 2.75e-01 84.4% 48.6%
3959465 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.53 34.0 3.39e-01 77.9% 60.8%
4011994 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 31.0 3.28e-01 79.5% 64.5%
3488827 3369.1.1.0 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 0.50 37.0 3.32e-01 76.2% 85.7%
D3 medium residues 76-121_389-413
PDB
Domain cluster: representative
D4 medium residues 334-388_414-438
PDB