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IMGVR_UViG_3300019487_000071-3300019487-Ga0187893_1000332586

Arc-Vir

IMGVR_UViG_3300019487_000071-3300019487-Ga0187893_1000332586

Identity

Kingdom:
archaea

Quality

75.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-105
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vskA03 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.59 39.0 2.66e-01 86.2% 17.6%
3ek7A01 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.59 53.0 3.91e-01 100.0% 44.1%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 36.0 3.99e-01 93.6% 83.1%
1rm6D04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.56 41.0 3.10e-01 76.6% 38.6%
1ek9A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.55 46.0 3.02e-01 93.6% 97.9%
4jneA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.55 43.0 4.39e-01 90.4% 90.9%
1rtqA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 44.0 3.18e-01 90.4% 94.8%
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 41.0 3.86e-01 100.0% 67.5%
3icsA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 40.0 2.99e-01 80.9% 40.7%
4fx9A03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.53 39.0 3.71e-01 77.7% 89.4%
3a2eA00 3.30.430.20 Alpha Beta › 2-Layer Sandwich › Killer Toxin P4; Chain A › Gnk2 domain, C-X8-C-X2-C motif 0.53 46.0 4.48e-01 100.0% 95.4%
1sh8B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 43.0 3.71e-01 89.4% 59.7%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 39.0 3.43e-01 79.8% 95.1%
1tzzB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 37.0 3.51e-01 78.7% 96.6%
1w7cA03 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 42.0 3.99e-01 100.0% 77.4%
1nhpA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.50 37.0 3.51e-01 77.7% 90.3%
3dxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 40.0 3.75e-01 100.0% 70.1%
3ramA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 38.0 3.57e-01 80.9% 94.9%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4405873 223.2.1.33 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.64 48.0 4.51e-01 100.0% 64.3%
4041054 304.135.1.1 ↗ a+b two layers › Alpha-beta plaits › O-phosphoseryl-tRNA synthetase C-terminal domain › O-phosphoseryl-tRNA synthetase C-terminal domain › SepRS_C 0.60 44.0 3.50e-01 76.6% 92.1%
4518553 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.59 50.0 4.62e-01 100.0% 72.5%
3441742 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.59 52.0 4.99e-01 100.0% 98.2%
5048993 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 52.0 4.66e-01 97.9% 77.7%
3462193 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.57 49.0 4.82e-01 97.9% 96.2%
3646024 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.56 49.0 4.64e-01 96.8% 95.5%
357202 896.1.1.2 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.55 38.0 4.02e-01 93.6% 81.7%
4025995 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.55 41.0 3.05e-01 77.7% 62.1%
3176281 896.1.1.3 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.55 33.0 3.74e-01 98.9% 77.3%
4965929 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.55 49.0 3.44e-01 100.0% 33.8%
4943061 244.2.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 0.55 40.0 3.70e-01 77.7% 81.6%
3258452 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 39.0 3.64e-01 95.7% 59.2%
4203072 330.1.1.19 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.54 36.0 3.50e-01 94.7% 60.0%
3354935 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.54 47.0 4.56e-01 97.9% 95.2%
3620732 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 46.0 4.05e-01 100.0% 75.2%
4926797 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 41.0 3.74e-01 98.9% 60.8%
3492440 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 35.0 3.21e-01 94.7% 50.4%
3811991 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.52 45.0 4.21e-01 97.9% 85.0%
4883407 883.1.1.8 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › Grp7_allergen 0.52 41.0 3.36e-01 87.2% 87.6%
4962490 244.2.1.1 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Pyr_redox_dim 0.52 39.0 3.58e-01 80.9% 84.8%
2432009 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.51 45.0 4.32e-01 97.9% 93.5%
4031032 314.1.1.9 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.51 36.0 2.68e-01 74.5% 83.8%
5052993 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.51 41.0 3.27e-01 89.4% 74.1%
5001392 330.10.1.0 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain 0.51 37.0 3.17e-01 100.0% 45.6%
3874721 5.1.4.533 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FANCAA 0.51 38.0 3.29e-01 95.7% 48.1%
5005118 244.2.1.1 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Pyr_redox_dim 0.51 37.0 3.44e-01 79.8% 80.5%
3884096 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 41.0 2.85e-01 93.6% 32.5%