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IMGVR_UViG_3300019926_000031-3300019926-Ga0207284_10000102

Arc-Vir

IMGVR_UViG_3300019926_000031-3300019926-Ga0207284_10000102

Identity

Kingdom:
archaea

Quality

79.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-118
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.63 47.0 4.21e-01 78.6% 85.6%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 35.0 4.26e-01 77.8% 92.0%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.59 28.0 3.77e-01 93.2% 88.1%
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.58 42.0 3.57e-01 76.1% 74.5%
3nctA00 3.40.50.11880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Plasmid SOS inhibition protein 0.57 41.0 3.93e-01 94.0% 63.5%
6qk7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 42.0 3.00e-01 76.9% 97.6%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.56 52.0 4.73e-01 100.0% 83.6%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.56 38.0 3.45e-01 88.0% 50.9%
7cu8E01 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.55 34.0 2.98e-01 81.2% 39.0%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.54 36.0 3.80e-01 81.2% 74.5%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 31.0 3.60e-01 97.4% 80.2%
1v3eA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 45.0 3.10e-01 91.5% 79.1%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 30.0 3.69e-01 91.5% 91.5%
4ojdH01 2.60.98.60 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 0.51 45.0 4.08e-01 99.1% 94.5%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 32.0 3.26e-01 85.5% 61.7%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 33.0 3.78e-01 99.1% 89.5%
3kyaA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 42.0 2.97e-01 88.9% 73.0%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3709736 5.1.4.238 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7048 0.65 51.0 3.47e-01 82.1% 99.0%
3605319 5.1.4.238 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7048 0.64 51.0 3.51e-01 85.5% 96.5%
3427945 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.62 45.0 4.82e-01 74.4% 100.0%
3418904 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.62 44.0 4.79e-01 74.4% 98.0%
3369887 158.1.1.1 ↗ alpha bundles › Lipoxygenase › Lipoxygenase › Lipoxygenase › Lipoxygenase 0.61 47.0 3.15e-01 80.3% 70.5%
3242315 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.60 30.0 4.10e-01 95.7% 100.0%
4251413 4099.1.1.26 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Kre28 0.59 45.0 4.61e-01 93.2% 83.5%
3601112 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.58 44.0 3.40e-01 78.6% 55.8%
3173480 3755.4.1.28 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Kre28 0.58 43.0 4.77e-01 88.0% 98.9%
224086 9.18.1.0 ↗ beta barrels › Lipocalins/Streptavidin 0.56 52.0 4.73e-01 100.0% 83.6%
1063578 9.2.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin 0.55 37.0 3.83e-01 82.1% 74.5%
3219425 5.1.3.238 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF29568 0.53 38.0 3.76e-01 73.5% 95.2%
3278511 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.53 32.0 3.79e-01 78.6% 88.7%
3714739 4252.1.1.10 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF2804 0.52 39.0 3.74e-01 78.6% 89.2%
4079710 3369.1.1.1 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.52 42.0 3.87e-01 87.2% 94.8%
3290421 2004.1.1.689 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15, AAA_21 0.52 42.0 2.96e-01 87.2% 73.5%
3835833 210.1.2.8 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › TANGO2 0.51 38.0 3.04e-01 79.5% 92.2%
3217546 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.51 37.0 3.77e-01 94.9% 77.4%
3960051 327.5.1.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C_2 0.50 33.0 3.40e-01 100.0% 69.1%
3661144 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.50 38.0 2.82e-01 82.1% 89.9%