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IMGVR_UViG_3300019926_000031-3300019926-Ga0207284_100001049
Arc-VirIMGVR_UViG_3300019926_000031-3300019926-Ga0207284_100001049
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-77
Domain cluster:
rep: IMGVR_UViG_646564555_000004-646564555-646645407__D12-82
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wcrB00 | 3.10.129.140 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Helicobacter TNF-alpha-Inducing protein | 0.62 | 45.0 | 3.59e-01 | 76.0% | 87.7% |
| 3bnkA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 45.0 | 3.37e-01 | 76.0% | 53.2% |
| 3fgeA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 46.0 | 3.50e-01 | 78.7% | 66.3% |
| 3hp7A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 43.0 | 3.15e-01 | 76.0% | 79.0% |
| 2b9kA00 | 2.20.20.70 | Mainly Beta › Single Sheet › Anthopleurin-A › | 0.59 | 36.0 | 4.40e-01 | 92.0% | 100.0% |
| 3b82A06 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 44.0 | 3.79e-01 | 94.7% | 51.2% |
| 3rgfA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 40.0 | 3.67e-01 | 73.3% | 57.3% |
| 4pbdA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 49.0 | 4.43e-01 | 96.0% | 82.4% |
| 3gbnL02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 30.0 | 3.64e-01 | 94.7% | 87.8% |
| 3eeeA00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.56 | 43.0 | 3.25e-01 | 82.7% | 35.1% |
| 2x8kA01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.56 | 40.0 | 3.61e-01 | 76.0% | 72.4% |
| 2v94B00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.56 | 40.0 | 3.77e-01 | 76.0% | 67.7% |
| 3kp0A03 | 3.30.30.60 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain | 0.56 | 38.0 | 4.00e-01 | 73.3% | 79.1% |
| 2k8qA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 48.0 | 3.92e-01 | 94.7% | 61.9% |
| 1v4pC01 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.55 | 38.0 | 3.37e-01 | 72.0% | 65.7% |
| 6mv2A01 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 46.0 | 4.22e-01 | 96.0% | 87.3% |
| 6k3lB02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 38.0 | 3.56e-01 | 73.3% | 60.4% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.53 | 45.0 | 4.26e-01 | 98.7% | 88.5% |
| 6n3oA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 39.0 | 3.69e-01 | 78.7% | 67.8% |
| 5xyiY00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 37.0 | 3.39e-01 | 74.7% | 59.0% |
| 4lfhD02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 42.0 | 4.08e-01 | 96.0% | 78.8% |
| 3kyfA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.53 | 42.0 | 3.63e-01 | 86.7% | 97.4% |
| 1qd1A01 | 3.30.990.10 | Alpha Beta › 2-Layer Sandwich › Formiminotransferase-cyclodeaminase; Chain B, domain 1 › Formiminotransferase, N-terminal subdomain | 0.53 | 43.0 | 3.32e-01 | 98.7% | 38.3% |
| 2cg9X01 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 45.0 | 4.11e-01 | 94.7% | 86.0% |
| 4pioA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 37.0 | 2.80e-01 | 73.3% | 87.8% |
| 2xcmC00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 43.0 | 4.09e-01 | 92.0% | 87.0% |
| 1sc6A03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.52 | 42.0 | 4.17e-01 | 100.0% | 84.1% |
| 3bpkA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 45.0 | 3.38e-01 | 94.7% | 71.5% |
| 6h8oA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.52 | 38.0 | 3.57e-01 | 93.3% | 62.1% |
| 1ejfA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 45.0 | 3.97e-01 | 96.0% | 80.0% |
| 2xzmP00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 37.0 | 3.02e-01 | 76.0% | 42.6% |
| 1kviA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 41.0 | 4.07e-01 | 100.0% | 87.3% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 169881 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.62 | 46.0 | 3.36e-01 | 78.7% | 57.6% |
| 3839604 | 592.2.1.4 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › Tipalpha | 0.60 | 43.0 | 3.39e-01 | 76.0% | 85.6% |
| 4256961 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.58 | 36.0 | 4.15e-01 | 73.3% | 87.3% |
| 5061711 | 304.54.1.0 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like | 0.57 | 46.0 | 4.40e-01 | 100.0% | 74.2% |
| 5056215 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.57 | 41.0 | 3.27e-01 | 76.0% | 83.7% |
| 5015738 | 304.8.1.82 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 | 0.57 | 45.0 | 3.85e-01 | 86.7% | 92.0% |
| 5019545 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.56 | 39.0 | 3.97e-01 | 72.0% | 100.0% |
| 4637527 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.56 | 48.0 | 4.11e-01 | 97.3% | 67.2% |
| 4014343 | 304.18.1.0 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS | 0.55 | 48.0 | 4.34e-01 | 97.3% | 93.3% |
| 4169700 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.55 | 47.0 | 3.41e-01 | 97.3% | 45.8% |
| 5033599 | 304.4.1.82 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF3303 | 0.55 | 44.0 | 4.37e-01 | 94.7% | 83.7% |
| 4507171 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.55 | 47.0 | 3.40e-01 | 97.3% | 44.4% |
| 3178432 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.55 | 47.0 | 2.90e-01 | 97.3% | 20.6% |
| 4002521 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.55 | 40.0 | 3.38e-01 | 78.7% | 48.5% |
| 3384464 | 304.127.1.0 ↗ | a+b two layers › Alpha-beta plaits › Notch heterodimerization domain › Notch heterodimerization domain | 0.54 | 48.0 | 4.02e-01 | 98.7% | 87.7% |
| 4679904 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.54 | 48.0 | 3.40e-01 | 100.0% | 42.1% |
| 3778612 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.54 | 47.0 | 4.30e-01 | 98.7% | 87.0% |
| 5048952 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.54 | 37.0 | 2.62e-01 | 70.7% | 33.0% |
| 4079081 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.54 | 47.0 | 2.88e-01 | 100.0% | 18.9% |
| 4403284 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.54 | 46.0 | 4.19e-01 | 94.7% | 81.0% |
| 1240941 | 872.5.1.1 ↗ | a+b two layers › Dodecin subunit-like › D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain › D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain › OAM_dimer | 0.54 | 39.0 | 3.66e-01 | 76.0% | 67.8% |
| 3163728 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.54 | 47.0 | 4.19e-01 | 98.7% | 98.2% |
| 4084659 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.54 | 46.0 | 4.20e-01 | 97.3% | 72.0% |
| 5068348 | 11.12.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like | 0.53 | 45.0 | 3.57e-01 | 96.0% | 86.1% |
| 3968187 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.53 | 47.0 | 3.97e-01 | 100.0% | 86.2% |
| 4973571 | 304.4.1.82 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF3303 | 0.53 | 41.0 | 4.03e-01 | 93.3% | 76.5% |
| 5049188 | 872.5.1.1 ↗ | a+b two layers › Dodecin subunit-like › D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain › D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain › OAM_dimer | 0.53 | 38.0 | 3.79e-01 | 76.0% | 77.5% |
| 3778963 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.53 | 45.0 | 3.95e-01 | 98.7% | 71.7% |
| 2106053 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.53 | 37.0 | 3.39e-01 | 74.7% | 59.0% |
| 5017989 | 304.4.1.82 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF3303 | 0.53 | 43.0 | 4.07e-01 | 94.7% | 75.6% |
| 4161177 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.53 | 46.0 | 2.80e-01 | 100.0% | 19.2% |
| 3331686 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.52 | 37.0 | 3.51e-01 | 74.7% | 66.7% |
| 4992138 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.52 | 44.0 | 4.20e-01 | 100.0% | 80.0% |
| 5031804 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.52 | 44.0 | 4.11e-01 | 97.3% | 80.0% |
| 5021963 | 304.8.1.116 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF3303 | 0.52 | 41.0 | 3.72e-01 | 94.7% | 62.9% |
| 5002952 | 304.4.1.82 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF3303 | 0.52 | 40.0 | 3.87e-01 | 94.7% | 73.3% |
| 3673475 | 304.27.1.2 ↗ | a+b two layers › Alpha-beta plaits › Formiminotransferase domain of formiminotransferase-cyclodeaminase. › Formiminotransferase domain of formiminotransferase-cyclodeaminase. › FTCD_N | 0.51 | 44.0 | 3.28e-01 | 98.7% | 41.9% |
| 4137984 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.51 | 43.0 | 3.76e-01 | 96.0% | 80.8% |
| 4543745 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.51 | 43.0 | 2.62e-01 | 94.7% | 15.0% |
| 3662469 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 45.0 | 2.92e-01 | 100.0% | 48.4% |