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IMGVR_UViG_3300019926_000031-3300019926-Ga0207284_100001056

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300019926_000031-3300019926-Ga0207284_100001056 ↗
Kingdom:: archaea

Quality

76.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-77

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4dz1A02	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.66	46.0	4.18e-01	71.4%	100.0%
5wjpA02	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.62	43.0	3.99e-01	71.4%	100.0%
2e9xB01	3.40.5.50	Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 ›	0.61	41.0	4.37e-01	80.5%	80.3%
1jwwA00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.58	40.0	4.05e-01	74.0%	96.2%
3hn0A02	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.56	45.0	4.22e-01	88.3%	98.0%
2nyiA01	3.30.70.260	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain	0.56	41.0	4.05e-01	77.9%	96.3%
6ruiC01	3.30.1360.10	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit	0.56	39.0	3.16e-01	75.3%	51.5%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5009	4076.3.1.2 ↗	a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › YqbF	0.70	44.0	5.12e-01	74.0%	100.0%
3423904	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.61	44.0	4.20e-01	75.3%	83.3%
3803359	304.3.1.1 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA	0.61	43.0	4.31e-01	74.0%	87.5%
4681907	205.1.1.42 ↗	a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4, Fer4_6, Fer4_7	0.61	43.0	4.15e-01	75.3%	86.7%
3826053	304.3.1.1 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA	0.59	42.0	4.04e-01	75.3%	81.1%
4452949	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.57	40.0	3.85e-01	74.0%	80.0%
4306250	275.1.1.0 ↗	a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	0.57	33.0	3.50e-01	70.1%	62.9%
5075137	205.1.1.33 ↗	a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_10	0.56	41.0	4.28e-01	77.9%	94.3%
3826676	109.4.1.583 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi	0.56	49.0	3.22e-01	100.0%	63.5%
None	—		0.55	41.0	4.27e-01	79.2%	95.7%
4007792	10.12.1.115 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437	0.55	46.0	3.95e-01	98.7%	97.0%
3720263	109.4.1.202 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16	0.53	39.0	2.49e-01	81.8%	60.2%
3519123	304.169.1.3 ↗	a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WCX	0.52	39.0	3.77e-01	84.4%	70.0%
3164077	7523.1.1.26 ↗	a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_6	0.52	41.0	3.35e-01	88.3%	85.3%
4494370	205.1.1.82 ↗	a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4, Fer4_6, Fer4_10	0.51	42.0	4.28e-01	93.5%	94.7%