←Back to structures

IMGVR_UViG_3300020032_000012-3300020032-Ga0182240_1008844

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300020032_000012-3300020032-Ga0182240_1008844 ↗
Kingdom:: archaea

Quality

71.3 mean pLDDT

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 30-49_153-165_179-248_268-293

PDB

Domain cluster: rep: IMGVR_UViG_3300036942_000191-3300036942-Ga0377186_004296_7672_8994__D50-61_195-282

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3j7aF03	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.56	28.0	3.46e-01	97.7%	80.3%
2vknA00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.52	27.0	3.47e-01	91.5%	92.4%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4034031	4056.1.1.0 ↗	beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein	0.74	37.0	5.24e-01	80.6%	98.5%
3930643	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.57	27.0	3.66e-01	90.7%	93.3%
3784968	4.1.1.92 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_9	0.54	32.0	3.81e-01	93.8%	91.3%
3419158	4.8.1.0 ↗	beta barrels › SH3 › Chromo domain-like › Chromo domain-like	0.54	27.0	3.50e-01	80.6%	90.8%

D2 medium residues 50-152_166-178_416-460

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4pofA03	2.20.28.10	Mainly Beta › Single Sheet › Rubrerythrin, domain 2 ›	0.62	19.0	3.53e-01	73.9%	90.0%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2507149	375.1.1.48 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF35_N	0.79	19.0	4.35e-01	75.2%	100.0%
4933180	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.77	18.0	4.20e-01	73.9%	97.1%
5063434	375.1.1.48 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF35_N	0.74	19.0	3.90e-01	75.2%	82.2%
5036844	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.74	21.0	4.09e-01	78.3%	91.1%
3980619	4038.1.1.7 ↗	alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal_2	0.65	61.0	4.80e-01	100.0%	79.7%
5039294	4038.1.1.1 ↗	alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal	0.65	61.0	4.95e-01	98.8%	87.1%
3964357	4038.1.1.1 ↗	alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal	0.64	60.0	4.86e-01	100.0%	85.2%
4954546	4038.1.1.0 ↗	alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein	0.60	57.0	4.58e-01	99.4%	84.8%
4410228	4038.1.1.1 ↗	alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal	0.60	56.0	4.63e-01	100.0%	88.0%

D3 medium residues 295-415

PDB

Domain cluster: rep: OK349510.1__UJJ74872.1__X__00221__D5-114

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3948092	4038.1.1.0 ↗	alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein	0.76	67.0	5.53e-01	94.2%	55.7%
3947685	4038.1.1.1 ↗	alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal	0.73	66.0	5.37e-01	98.3%	53.8%