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IMGVR_UViG_3300020084_002533-3300020084-Ga0194110_100287311

Arc-Vir

IMGVR_UViG_3300020084_002533-3300020084-Ga0194110_100287311

Quality

86.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 131-239
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v5yA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.72 42.0 4.51e-01 91.7% 66.3%
3lqmA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 40.0 4.10e-01 92.7% 61.8%
2cuhA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 45.0 4.93e-01 99.1% 86.4%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.66 52.0 5.14e-01 89.9% 79.3%
4zchA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.66 49.0 4.61e-01 78.0% 77.7%
3s98A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 46.0 4.90e-01 100.0% 85.3%
4ht1T00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.63 47.0 4.47e-01 79.8% 77.9%
6m3yA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 43.0 4.29e-01 99.1% 67.8%
1rj8A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.61 47.0 4.29e-01 80.7% 99.3%
2lw3A00 2.60.40.2880 Mainly Beta › Sandwich › Immunoglobulin-like › MmpS1-5, C-terminal soluble domain 0.60 44.0 4.71e-01 92.7% 93.3%
2c3vA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 42.0 4.46e-01 98.2% 84.0%
3cjiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 45.0 3.55e-01 81.7% 51.7%
4oumA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.59 45.0 4.29e-01 81.7% 71.2%
1o91A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.59 45.0 4.25e-01 80.7% 98.5%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.59 42.0 4.17e-01 75.2% 73.5%
4bfeC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 47.0 4.74e-01 100.0% 90.6%
3rwnB00 2.60.120.1120 Mainly Beta › Sandwich › Jelly Rolls › Sf6-type phage tail needle knob 0.58 44.0 3.94e-01 80.7% 70.8%
3oq3B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 42.0 4.40e-01 100.0% 84.0%
5h4cB00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.57 44.0 4.13e-01 81.7% 74.1%
3a21A03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 41.0 4.28e-01 76.1% 96.0%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 3.93e-01 90.8% 69.6%
1t5rB00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.56 47.0 3.54e-01 91.7% 70.5%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.56 40.0 3.65e-01 76.1% 66.4%
4eq3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 4.69e-01 99.1% 89.8%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 46.0 4.08e-01 92.7% 87.6%
1yrzA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 41.0 3.39e-01 80.7% 78.5%
1js8B02 2.60.310.10 Mainly Beta › Sandwich › Hemocyanin; Chain: A, domain 2 › Haemocyanin C-terminal domain 0.54 39.0 4.00e-01 75.2% 94.3%
1yt5A02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.54 49.0 4.71e-01 100.0% 100.0%
3cu7A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.54 41.0 4.24e-01 100.0% 84.0%
5vqfD01 2.60.120.970 Mainly Beta › Sandwich › Jelly Rolls › 0.54 40.0 3.22e-01 79.8% 51.8%
3anzC00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.53 45.0 3.34e-01 93.6% 71.8%
2covG00 2.60.40.2450 Mainly Beta › Sandwich › Immunoglobulin-like › Beta-1,3-xylanase, CBM31 domain 0.53 39.0 4.25e-01 100.0% 95.5%
2hr0B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 4.27e-01 100.0% 86.2%
1bdyA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 41.0 3.93e-01 99.1% 73.2%
7skhB01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.52 39.0 4.11e-01 100.0% 89.7%
7t4dA01 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.52 44.0 3.22e-01 93.6% 69.3%
1d5rA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.96e-01 100.0% 72.9%
3hn3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 4.23e-01 98.2% 90.4%
4cvuA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 45.0 4.49e-01 100.0% 93.1%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3259180 10.4.1.25 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › PF26736 0.81 46.0 5.21e-01 71.6% 73.5%
3276836 10.4.1.25 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › PF26736 0.75 44.0 4.96e-01 71.6% 76.2%
3224349 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.69 52.0 5.58e-01 93.6% 90.5%
3798428 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 46.0 4.87e-01 88.1% 86.3%
3278377 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 39.0 4.08e-01 91.7% 68.0%
3600004 10.37.1.0 beta sandwiches › jelly-roll › TerD › TerD 0.62 55.0 4.77e-01 99.1% 77.1%
3619717 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 44.0 4.72e-01 88.1% 86.3%
5045594 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.61 43.0 4.40e-01 100.0% 76.2%
1158350 10.32.1.165 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM13-like 0.60 40.0 4.33e-01 73.4% 80.6%
3537016 10.3.1.2 beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.60 46.0 4.42e-01 81.7% 74.2%
3212409 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 46.0 4.20e-01 83.5% 88.3%
3745246 10.3.1.2 beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.58 44.0 4.04e-01 80.7% 68.5%
4122799 4004.1.1.3 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.55 50.0 4.41e-01 100.0% 81.2%
4013309 10.9.1.3 beta sandwiches › jelly-roll › C-terminal domain of mullusc hemocyanin › C-terminal domain of mullusc hemocyanin › Tyrosinase_C 0.55 47.0 4.00e-01 93.6% 93.3%
3181156 11.1.4.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CBM_20 0.55 46.0 4.52e-01 100.0% 85.2%
5019286 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 43.0 4.47e-01 99.1% 92.0%
3530114 11.1.1.17 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Transglut_C 0.52 44.0 4.33e-01 100.0% 86.1%
3936802 10.1.1.90 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF29322 0.52 42.0 3.88e-01 89.9% 83.3%
3875508 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.52 47.0 4.41e-01 100.0% 86.2%
3482455 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 42.0 3.48e-01 93.6% 79.5%
3174198 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 38.0 3.24e-01 80.7% 60.0%
4963974 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.50 37.0 2.68e-01 78.0% 85.1%
D2 medium residues 84-127_248-280
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3w5mA05 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.72 63.0 4.17e-01 100.0% 32.9%
3m0fB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.72 57.0 4.91e-01 87.0% 81.3%
3lszA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.71 53.0 4.58e-01 81.8% 86.4%
8f5oD01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.71 64.0 4.01e-01 100.0% 22.2%
4gyoB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.69 57.0 4.69e-01 90.9% 64.0%
4ui9Y03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.69 54.0 5.38e-01 90.9% 83.7%
4wr4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.68 53.0 4.90e-01 87.0% 90.5%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 46.0 4.14e-01 70.1% 82.7%
2qfcA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.66 57.0 3.91e-01 98.7% 33.1%
5tqbB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.66 57.0 3.78e-01 100.0% 33.7%
2yhcA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.65 52.0 3.88e-01 89.6% 52.2%
4f5cA04 1.25.50.20 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › 0.64 56.0 3.71e-01 98.7% 47.3%
2x3mA00 1.25.40.670 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 47.0 3.76e-01 80.5% 46.4%
2xevB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 53.0 4.65e-01 97.4% 67.7%
6u3wB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 55.0 3.73e-01 100.0% 29.2%
4i17A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 54.0 3.91e-01 97.4% 54.5%
4me2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 52.0 4.01e-01 97.4% 62.4%
1hu3A00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.62 53.0 4.00e-01 98.7% 66.2%
5m72A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 52.0 4.21e-01 100.0% 49.3%
5dikA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.61 47.0 4.15e-01 83.1% 67.9%
2lniA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 53.0 4.44e-01 98.7% 61.7%
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.61 44.0 3.64e-01 77.9% 87.2%
1dk5A04 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.60 42.0 4.37e-01 72.7% 98.6%
3nivC02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 46.0 4.04e-01 85.7% 92.7%
4g26A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 51.0 3.50e-01 100.0% 62.0%
4ga6A02 1.20.970.50 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › 0.59 50.0 4.14e-01 98.7% 90.8%
2kckA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 51.0 4.58e-01 100.0% 72.3%
3nqxA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.57 43.0 3.59e-01 83.1% 98.6%
2xvtC00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.56 38.0 3.78e-01 70.1% 91.1%
3fiwA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 48.0 4.20e-01 100.0% 89.7%
1f5qB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 41.0 3.44e-01 84.4% 68.1%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 46.0 3.89e-01 96.1% 85.4%
4iuyA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 41.0 3.00e-01 93.5% 90.9%
3g0oA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.50 44.0 3.78e-01 96.1% 86.8%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3767382 109.4.1.210 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.70 63.0 4.33e-01 100.0% 29.1%
3941949 109.4.1.201 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_14,TPR_19 0.70 61.0 4.41e-01 98.7% 33.8%
4370527 109.4.1.210 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.69 59.0 5.23e-01 98.7% 65.2%
3592423 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 61.0 4.42e-01 100.0% 43.3%
3821987 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.67 59.0 4.55e-01 98.7% 48.2%
3818258 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 58.0 4.58e-01 98.7% 63.6%
3837749 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.67 56.0 3.82e-01 94.8% 33.1%
3438540 109.4.1.1255 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.66 56.0 4.35e-01 98.7% 70.3%
3680048 604.6.1.2 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › ANTH 0.65 56.0 4.44e-01 100.0% 82.4%
3622873 109.4.1.1811 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TT21_2nd, ARM_TT21_N 0.64 56.0 3.59e-01 100.0% 27.3%
3198002 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 54.0 3.93e-01 97.4% 54.2%
5069144 109.4.1.2382 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29407 0.64 56.0 3.46e-01 98.7% 16.2%
3668122 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 56.0 4.99e-01 98.7% 89.1%
3420828 109.4.1.1282 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, TPR_24 0.64 53.0 3.62e-01 94.8% 38.3%
3447119 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.63 53.0 4.41e-01 97.4% 79.3%
3433756 109.4.1.5 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.62 55.0 4.19e-01 100.0% 42.7%
3318507 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.62 53.0 3.86e-01 98.7% 43.0%
4018262 109.4.1.1437 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANAPC3, TPR_8 0.62 53.0 4.15e-01 94.8% 46.1%
3592975 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 54.0 3.98e-01 100.0% 40.0%
3338770 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 54.0 4.18e-01 98.7% 46.3%
3328279 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.61 52.0 4.85e-01 98.7% 80.0%
3661283 109.4.1.1260 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.61 50.0 3.47e-01 93.5% 40.4%
4970295 109.4.1.186 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANAPC3 0.60 51.0 3.86e-01 100.0% 38.1%
3671587 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.58 49.0 3.89e-01 98.7% 48.2%
3969000 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.55 37.0 3.32e-01 70.1% 70.4%
3968272 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.55 37.0 3.11e-01 70.1% 57.9%
3586769 101.1.1.302 alpha arrays › HTH › HTH › Three-helical HTH › FAM91_N 0.54 39.0 3.59e-01 98.7% 58.1%
4010830 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.53 36.0 2.97e-01 70.1% 54.0%
1143835 131.2.1.1 alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › HD,PolyA_pol_RNAbd 0.53 45.0 3.21e-01 100.0% 64.7%
3902628 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.53 38.0 2.84e-01 79.2% 43.4%
3955500 101.1.2.655 alpha arrays › HTH › HTH › winged helix domain › DUF732 0.50 35.0 3.50e-01 72.7% 79.5%
D3 medium residues 281-381
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w6jA02 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.86 79.0 5.19e-01 98.0% 61.7%
1umpA01 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.85 78.0 5.23e-01 98.0% 60.5%
3cu7A11 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.81 75.0 5.13e-01 100.0% 79.7%
4ce7B00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.79 72.0 4.86e-01 98.0% 63.5%
1hzfA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.78 72.0 5.03e-01 100.0% 81.1%
3dssB00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.77 71.0 4.86e-01 100.0% 65.1%
3renA00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.77 70.0 4.77e-01 99.0% 60.8%
3draB00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.74 68.0 4.58e-01 100.0% 54.7%
1ks8A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.74 63.0 4.10e-01 92.1% 41.8%
7xkxA01 1.50.10.160 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.74 63.0 5.06e-01 92.1% 53.9%
5bp8A01 1.50.10.160 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.72 64.0 4.87e-01 96.0% 52.7%
3a0oA02 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.71 65.0 4.37e-01 99.0% 58.1%
3p5pA01 1.50.10.130 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Terpene synthase, N-terminal domain 0.71 64.0 4.82e-01 99.0% 71.4%
2afaA00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.67 59.0 3.94e-01 99.0% 72.5%
3bwtA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.66 56.0 3.91e-01 94.1% 40.2%
3tt9A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.66 56.0 4.36e-01 96.0% 82.4%
1w6kA03 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.65 58.0 4.17e-01 97.0% 60.0%
2sqcA02 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.65 57.0 4.13e-01 95.0% 60.3%
3opbA01 1.25.10.100 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › 0.64 54.0 3.94e-01 94.1% 48.8%
3vldA02 1.25.40.580 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 55.0 4.79e-01 96.0% 77.8%
2iqcA00 1.25.40.490 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 49.0 4.14e-01 96.0% 58.4%
3ay8A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 48.0 4.42e-01 96.0% 82.4%
4by6D02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 46.0 3.67e-01 96.0% 53.8%
5zzjA02 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.53 46.0 3.37e-01 100.0% 72.0%
4ip8A00 1.10.132.110 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein 0.53 39.0 3.86e-01 78.2% 78.1%
3ckcA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 42.0 3.62e-01 92.1% 91.5%
2r6aC01 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.51 34.0 3.55e-01 90.1% 71.9%
2iaiA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 34.0 3.18e-01 70.3% 73.5%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4959451 109.2.1.32 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › SQHop_cyclase_C 0.84 78.0 5.65e-01 99.0% 74.6%
4997828 109.2.1.32 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › SQHop_cyclase_C 0.84 78.0 5.31e-01 100.0% 80.0%
2527025 109.2.1.0 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.83 75.0 5.08e-01 97.0% 63.5%
5006630 109.2.1.32 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › SQHop_cyclase_C 0.82 75.0 5.25e-01 98.0% 54.6%
4987564 109.2.1.0 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.82 77.0 5.59e-01 100.0% 76.4%
5028657 109.2.1.0 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.81 77.0 5.66e-01 100.0% 43.8%
3497263 109.2.1.0 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.76 70.0 4.73e-01 100.0% 61.2%
3798273 109.2.1.0 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.76 69.0 5.28e-01 99.0% 80.8%
3648285 109.2.1.1 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Prenyltrans 0.76 69.0 4.50e-01 100.0% 45.5%
3298172 109.2.1.1 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Prenyltrans 0.76 69.0 4.69e-01 100.0% 69.9%
3475727 109.2.1.1 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Prenyltrans 0.75 68.0 5.16e-01 99.0% 89.8%
4978047 109.2.1.0 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.75 67.0 4.77e-01 99.0% 78.4%
3738378 109.2.1.1 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Prenyltrans 0.75 69.0 4.67e-01 100.0% 44.3%
4404229 109.2.1.1 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Prenyltrans 0.75 68.0 4.40e-01 100.0% 62.6%
3814890 109.2.1.1 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Prenyltrans 0.75 67.0 4.56e-01 99.0% 52.2%
3011077 109.2.1.0 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.74 65.0 4.97e-01 95.0% 47.6%
3846352 109.2.1.4 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Cobalamin_bind 0.74 68.0 4.69e-01 100.0% 56.5%
4943096 109.2.1.1 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Prenyltrans 0.73 64.0 4.56e-01 95.0% 39.0%
5014923 109.2.1.0 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.72 65.0 4.89e-01 98.0% 75.7%
4146810 109.2.1.7 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Terpene_synth 0.72 63.0 4.13e-01 96.0% 27.1%
5014906 109.2.1.1 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Prenyltrans 0.72 63.0 3.89e-01 96.0% 18.4%
3466890 109.2.1.7 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Terpene_synth 0.71 63.0 4.72e-01 99.0% 65.9%
4389690 109.2.1.7 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Terpene_synth 0.70 62.0 4.83e-01 99.0% 69.5%
4352324 109.2.1.33 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › SQHop_cyclase_N 0.67 60.0 4.25e-01 96.0% 58.6%
3679102 109.2.1.33 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › SQHop_cyclase_N 0.67 59.0 4.19e-01 96.0% 58.4%
3197817 109.2.1.33 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › SQHop_cyclase_N 0.65 58.0 4.18e-01 98.0% 56.8%
4480 109.2.1.33 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › SQHop_cyclase_N 0.65 57.0 4.12e-01 95.0% 60.1%
4028945 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 56.0 3.63e-01 100.0% 51.7%
3773683 109.4.1.1393 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26715 0.62 54.0 4.52e-01 96.0% 69.7%
3560657 601.1.1.59 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › HEAT_GCN1_2 0.62 54.0 4.53e-01 96.0% 69.7%
4325828 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 55.0 4.61e-01 99.0% 98.2%
3676089 109.4.1.460 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20_C 0.60 52.0 3.67e-01 98.0% 53.1%
3396039 109.4.1.1219 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_Mybbp1a 0.58 49.0 3.51e-01 95.0% 45.0%
3321593 109.4.1.1308 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, TPR_24 0.56 49.0 4.14e-01 96.0% 66.3%
185553 109.4.1.80 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRN3 0.56 48.0 3.83e-01 96.0% 48.3%
3802663 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.55 50.0 4.59e-01 100.0% 99.2%
3340216 109.4.1.1330 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_3, PPR_long 0.55 49.0 3.82e-01 100.0% 76.0%
3502913 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.52 44.0 3.43e-01 95.0% 50.6%
3818643 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.52 45.0 4.20e-01 96.0% 81.6%
4204460 5003.1.1.0 extended segments › Mitochondrial cytochrome c oxidase subunit IV › Mitochondrial cytochrome c oxidase subunit IV › Mitochondrial cytochrome c oxidase subunit IV 0.51 35.0 3.48e-01 71.3% 69.7%
D4 medium residues 382-439
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ef0B02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 36.0 2.58e-01 70.7% 30.3%
2o0bA01 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.51 38.0 2.70e-01 82.8% 72.7%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3752343 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.51 34.0 3.54e-01 72.4% 96.4%