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IMGVR_UViG_3300020139_000054-3300020139-Ga0197143_10042648

Arc-Vir

IMGVR_UViG_3300020139_000054-3300020139-Ga0197143_10042648

Quality

63.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-74
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4euyA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.68 50.0 4.68e-01 76.4% 90.7%
3lmlA03 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 50.0 4.76e-01 79.2% 72.9%
1hyrC01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.65 50.0 3.69e-01 81.9% 88.9%
3hxlA02 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 50.0 4.63e-01 83.3% 88.9%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.64 49.0 3.23e-01 83.3% 37.3%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 45.0 4.31e-01 75.0% 70.2%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 47.0 4.23e-01 80.6% 85.1%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 49.0 4.87e-01 84.7% 88.0%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.62 43.0 3.53e-01 72.2% 39.9%
4a2bA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 48.0 4.43e-01 86.1% 64.2%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.62 50.0 3.22e-01 88.9% 31.0%
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.62 49.0 3.89e-01 90.3% 69.2%
2a4vA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 49.0 3.99e-01 91.7% 94.6%
4hz9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 44.0 3.70e-01 81.9% 44.7%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 44.0 3.95e-01 77.8% 84.6%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 52.0 4.18e-01 94.4% 63.3%
4fvkA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.60 53.0 3.34e-01 95.8% 42.5%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 53.0 4.16e-01 98.6% 61.6%
1a6zA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.60 46.0 3.43e-01 81.9% 86.6%
2x49A01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.59 51.0 4.66e-01 97.2% 83.3%
2khxA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 44.0 4.31e-01 81.9% 93.7%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 42.0 3.49e-01 91.7% 41.9%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.59 47.0 3.55e-01 86.1% 85.9%
1y7bA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 48.0 3.22e-01 95.8% 39.4%
2ojhA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 46.0 3.13e-01 87.5% 36.8%
3dbxA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.57 45.0 3.38e-01 84.7% 86.7%
1inyA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.57 50.0 3.16e-01 98.6% 28.9%
2wsuB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 49.0 3.99e-01 98.6% 63.9%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.56 46.0 3.99e-01 90.3% 58.8%
3s27B01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 3.48e-01 91.7% 44.4%
4ywrA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 44.0 3.11e-01 86.1% 33.8%
6muwJ00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 44.0 3.18e-01 93.1% 30.2%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 39.0 3.40e-01 75.0% 88.6%
4mdaA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 49.0 3.57e-01 100.0% 46.5%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.55 48.0 3.73e-01 97.2% 85.7%
2db2A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 40.0 3.77e-01 80.6% 73.4%
1x31D00 3.30.2270.10 Alpha Beta › 2-Layer Sandwich › Folate-binding fold › Folate-binding superfamily 0.55 44.0 4.14e-01 88.9% 82.4%
1x49A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 40.0 4.12e-01 80.6% 91.4%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 44.0 2.90e-01 91.7% 31.2%
3u97A00 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.55 35.0 3.51e-01 70.8% 61.0%
4fdtB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.55 42.0 2.69e-01 86.1% 92.4%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.55 44.0 4.16e-01 91.7% 90.0%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 41.0 3.83e-01 83.3% 73.4%
2l2mA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 40.0 4.07e-01 80.6% 95.7%
2jkbA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 44.0 2.88e-01 98.6% 43.1%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.53 41.0 3.89e-01 87.5% 83.1%
3f2kB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 46.0 3.43e-01 98.6% 43.2%
5evhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 44.0 3.78e-01 98.6% 91.7%
1vw4502 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 37.0 3.58e-01 83.3% 87.0%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3615430 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.70 55.0 4.92e-01 84.7% 99.0%
3705941 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.69 54.0 5.24e-01 84.7% 96.2%
150040 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.68 50.0 4.68e-01 76.4% 90.7%
3830535 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.68 48.0 3.15e-01 73.6% 36.9%
5032832 5.1.5.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.66 56.0 3.45e-01 93.1% 37.6%
3623154 5.1.4.436 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, PQQ_2, Beta-prop_EMC1_N 0.66 52.0 2.97e-01 86.1% 11.9%
3189451 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.66 44.0 3.82e-01 88.9% 45.5%
3228776 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.65 44.0 2.92e-01 81.9% 17.3%
4890150 5.1.4.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APH-like_N 0.64 49.0 3.19e-01 81.9% 35.0%
3446029 859.1.1.1 a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA 0.64 55.0 4.27e-01 94.4% 46.5%
3737880 5.1.3.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.64 52.0 3.76e-01 86.1% 38.4%
3404508 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 52.0 3.31e-01 87.5% 33.1%
4965483 5.1.5.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.64 53.0 3.30e-01 88.9% 23.9%
1033236 295.1.1.1 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.63 46.0 4.57e-01 76.4% 78.4%
3299594 5.1.5.85 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_RFWD3 0.63 51.0 3.84e-01 88.9% 47.4%
4218441 5.1.7.5 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › BNR, Sortilin-Vps10 0.63 54.0 3.02e-01 98.6% 12.7%
3255777 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.62 51.0 4.65e-01 88.9% 85.3%
4321106 5.1.4.307 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29630 0.62 49.0 3.10e-01 87.5% 26.2%
144144 5.1.3.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neur 0.62 54.0 3.33e-01 94.4% 28.7%
3829679 5.1.4.224 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 0.62 51.0 3.16e-01 90.3% 20.5%
4586501 5.1.4.307 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29630 0.62 51.0 3.14e-01 91.7% 41.4%
3652949 5.1.5.85 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_RFWD3 0.61 49.0 3.25e-01 87.5% 27.0%
3806012 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.61 51.0 3.29e-01 91.7% 31.5%
5037589 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 51.0 3.25e-01 93.1% 29.3%
1110926 5.1.3.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neur 0.61 53.0 3.34e-01 94.4% 30.2%
3352272 331.9.1.2 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C 0.61 44.0 3.77e-01 76.4% 82.6%
4106397 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 46.0 4.56e-01 83.3% 88.0%
152631 5.1.3.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neur 0.60 53.0 3.34e-01 95.8% 42.5%
3728854 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 42.0 4.44e-01 75.0% 81.5%
3208314 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.60 48.0 2.83e-01 87.5% 18.4%
5043521 5090.1.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.60 50.0 4.05e-01 90.3% 66.7%
3258441 234.3.1.0 a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.60 46.0 4.57e-01 88.9% 78.7%
5067519 10.1.1.41 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.60 53.0 3.88e-01 98.6% 47.9%
4366777 5.1.5.205 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF27482 0.60 50.0 3.18e-01 93.1% 24.9%
5074806 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.59 48.0 3.34e-01 88.9% 47.8%
3887124 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 41.0 3.16e-01 75.0% 30.3%
3938509 5.1.4.304 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd 0.59 48.0 3.11e-01 88.9% 22.5%
2803292 5.1.3.25 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid 0.59 49.0 3.21e-01 91.7% 74.5%
3706360 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 49.0 3.19e-01 93.1% 26.8%
None 0.58 47.0 3.02e-01 88.9% 27.9%
4141336 2004.1.1.478 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15, AAA_21 0.58 48.0 3.06e-01 88.9% 49.0%
4944430 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.58 47.0 4.62e-01 100.0% 83.7%
4267176 2004.1.1.442 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 0.58 47.0 3.00e-01 88.9% 47.0%
3991341 5.1.4.304 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd 0.57 49.0 2.84e-01 94.4% 13.4%
4015564 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.57 47.0 3.17e-01 95.8% 39.7%
3440368 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 44.0 2.89e-01 87.5% 41.4%
3433185 1094.1.1.0 a/b three-layered sandwiches › Polycomb protein Eed insertion domain › Polycomb protein Eed insertion domain › Polycomb protein Eed insertion domain 0.57 48.0 3.41e-01 90.3% 86.8%
3632804 5.1.4.661 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.57 46.0 2.86e-01 88.9% 25.6%
3788141 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 41.0 4.14e-01 80.6% 85.3%
3862290 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.56 47.0 3.78e-01 97.2% 82.6%
4998670 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.56 40.0 3.72e-01 75.0% 91.1%
4014908 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.56 50.0 3.87e-01 100.0% 83.7%
4471350 4252.1.1.3 beta barrels › AttH-like › AttH-like › AttH-like › DA_C 0.56 50.0 4.00e-01 100.0% 91.7%
4653627 4252.1.1.3 beta barrels › AttH-like › AttH-like › AttH-like › DA_C 0.56 49.0 3.79e-01 98.6% 91.5%
4929364 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.56 37.0 3.94e-01 75.0% 75.4%
5012352 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.56 41.0 3.89e-01 79.2% 65.9%
3508171 3392.1.1.1 a+b two layers › Cytoplasmic domain of BfpC › Cytoplasmic domain of BfpC › Cytoplasmic domain of BfpC › PAP_PilO 0.56 44.0 3.42e-01 90.3% 38.2%
5042381 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.55 44.0 2.80e-01 90.3% 30.3%
3363058 5.1.8.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.55 45.0 3.22e-01 93.1% 43.6%
3603733 4121.1.1.19 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF27230 0.54 45.0 3.02e-01 95.8% 64.7%
4000950 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 46.0 3.24e-01 95.8% 66.3%
4194213 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 39.0 3.99e-01 75.0% 77.1%
4949734 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.54 40.0 3.86e-01 80.6% 76.5%
3729648 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.53 47.0 3.91e-01 98.6% 90.0%
3266531 234.3.1.0 a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.53 45.0 3.50e-01 94.4% 57.6%
3743378 4252.1.1.5 beta barrels › AttH-like › AttH-like › AttH-like › Svf1 0.53 43.0 3.50e-01 100.0% 90.3%
3370322 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.52 41.0 3.89e-01 88.9% 82.2%
3730429 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.51 45.0 3.67e-01 98.6% 89.6%