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IMGVR_UViG_3300020159_004532-3300020159-Ga0211734_111264231

Arc-Vir

IMGVR_UViG_3300020159_004532-3300020159-Ga0211734_111264231

Identity

Kingdom:
archaea

Quality

89.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 973-1052
PDB
Domain cluster: rep: BML_09012016_9m_scaffold_2_prodigal-single.1__X__X__00049__D582-664
D2 medium residues 3-125
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3880692 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.50 40.0 2.96e-01 86.2% 47.1%
D3 medium residues 137-307
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.67 33.0 4.26e-01 97.7% 84.6%
2as9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 29.0 3.84e-01 96.5% 78.7%
3hrpA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 33.0 4.17e-01 78.9% 88.4%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 30.0 3.73e-01 94.7% 72.8%
2hcjB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 34.0 4.57e-01 85.4% 100.0%
2fsdA00 2.60.40.2460 Mainly Beta › Sandwich › Immunoglobulin-like › Phage bIL170 RBP, head domain 0.58 29.0 3.53e-01 70.2% 71.8%
1wqsA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 32.0 3.97e-01 93.6% 88.3%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 26.0 3.82e-01 86.5% 100.0%
4m8rA01 2.60.40.3920 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 30.0 3.77e-01 93.6% 89.3%
1vioA03 3.30.70.1560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif 0.54 27.0 3.70e-01 99.4% 97.6%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 32.0 3.49e-01 94.2% 69.0%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 33.0 3.98e-01 98.8% 95.4%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.53 28.0 3.21e-01 88.3% 68.0%
2nyiA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 26.0 3.66e-01 99.4% 98.8%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 31.0 3.59e-01 91.2% 81.5%
1iarB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 28.0 3.50e-01 78.9% 90.6%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3513769 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.84 38.0 5.85e-01 71.9% 100.0%
5079674 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.80 36.0 5.48e-01 73.1% 98.7%
3944437 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.77 37.0 5.47e-01 74.3% 100.0%
3978877 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.74 35.0 4.91e-01 82.5% 88.9%
4194551 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.74 33.0 4.93e-01 85.4% 97.3%
3597282 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.74 35.0 5.06e-01 73.7% 97.5%
4060488 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 35.0 5.03e-01 83.0% 97.5%
3964292 1.1.13.38 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_BR0599 0.72 38.0 4.78e-01 72.5% 80.9%
1714452 11.21.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like 0.72 37.0 5.25e-01 73.7% 100.0%
1954233 11.21.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like 0.72 38.0 5.27e-01 82.5% 100.0%
4402716 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.71 36.0 4.91e-01 76.6% 96.5%
4197746 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.71 35.0 4.91e-01 78.4% 96.5%
2320864 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.69 35.0 4.93e-01 94.2% 100.0%
4066146 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 36.0 4.46e-01 80.7% 82.9%
3702149 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 36.0 3.78e-01 90.1% 59.4%
5026244 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 34.0 4.58e-01 81.9% 100.0%
3256920 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 33.0 3.83e-01 90.6% 69.6%
4936008 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.60 33.0 4.44e-01 82.5% 100.0%
3267872 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 35.0 4.00e-01 79.5% 82.3%
2418779 10.2.1.60 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › STIV_penton_2nd 0.55 23.0 3.11e-01 70.2% 71.6%
2099294 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.54 32.0 3.49e-01 94.2% 69.0%
4072524 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.54 34.0 4.17e-01 93.0% 99.1%
5056675 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 34.0 3.73e-01 86.0% 77.8%
3603040 301.7.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like 0.51 30.0 3.82e-01 81.9% 100.0%
D4 medium residues 327-366_429-476_1282-1304
PDB
Domain cluster: representative
D5 medium residues 477-584
PDB
Domain cluster: rep: IMGVR_UViG_3300017746_000056-3300017746-Ga0181389_10000689__D582-686
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v31A01 2.40.30.180 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Ubiquitin-activating enzyme E1, FCCH domain 0.72 51.0 5.38e-01 84.3% 81.4%
2ztnA02 2.40.30.190 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.70 55.0 5.02e-01 83.3% 83.0%
4b3fX02 2.40.30.270 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.63 46.0 4.84e-01 82.4% 83.7%
1i8dC02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 42.0 4.60e-01 85.2% 85.2%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 44.0 4.87e-01 82.4% 97.6%
2zxdA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 34.0 3.70e-01 81.5% 69.2%
4rdlA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.57 45.0 4.54e-01 83.3% 95.3%
1xqbA01 2.40.30.70 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like 0.57 46.0 4.59e-01 86.1% 88.1%
4n0rA03 2.60.40.3950 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 41.0 4.13e-01 85.2% 78.2%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 36.0 3.96e-01 70.4% 86.0%
2z9iC01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 34.0 3.61e-01 74.1% 75.0%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.52 38.0 3.54e-01 84.3% 60.1%
3m3pA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.52 35.0 2.82e-01 71.3% 61.4%
4i1kA00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.52 39.0 3.80e-01 85.2% 73.7%
2orzA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 39.0 3.53e-01 84.3% 77.3%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1954233 11.21.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like 0.67 49.0 5.35e-01 83.3% 93.3%
1685099 1.1.7.51 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › NeqB_N 0.61 33.0 4.27e-01 78.7% 96.6%
4505406 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 47.0 4.93e-01 83.3% 94.0%
3690254 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 45.0 4.86e-01 79.6% 97.8%
3250056 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 46.0 4.43e-01 83.3% 86.4%
3842233 1.1.7.69 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.58 43.0 4.63e-01 83.3% 92.2%
3452625 1.1.7.69 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.57 42.0 4.37e-01 84.3% 83.0%
5002155 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 44.0 4.61e-01 85.2% 93.0%
4959331 1.1.7.27 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF1905 0.56 40.0 4.49e-01 81.5% 100.0%
3247934 1.1.7.41 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom 0.56 44.0 4.61e-01 83.3% 94.7%
5066681 3127.1.1.1 ↗ beta sandwiches › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › DUF192 0.56 32.0 3.32e-01 87.0% 57.1%
3415428 1.1.7.69 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.54 41.0 4.22e-01 84.3% 83.8%
3893654 1.1.7.69 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.54 43.0 4.21e-01 84.3% 78.3%
3805726 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 42.0 4.12e-01 83.3% 96.7%
3965822 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 40.0 4.37e-01 81.5% 94.4%
5031533 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 42.0 4.22e-01 84.3% 96.4%
3388764 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 42.0 3.90e-01 84.3% 88.1%
3723768 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 39.0 4.22e-01 84.3% 93.3%
3487110 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 29.0 3.24e-01 72.2% 67.1%
5013280 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 39.0 4.13e-01 83.3% 89.5%
3490032 1.1.7.45 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th 0.52 41.0 3.96e-01 84.3% 83.7%
3274576 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 4.00e-01 88.9% 81.9%
5012252 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.50 40.0 4.04e-01 87.0% 97.3%
5063660 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.50 34.0 3.60e-01 83.3% 78.9%
D6 medium residues 585-615_1168-1205_1244-1263
PDB
Domain cluster: representative
D7 medium residues 651-732
PDB
Domain cluster: representative
D8 medium residues 733-824
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4028425 220.1.1.286 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CERLI1 0.61 43.0 3.84e-01 72.8% 70.8%
D9 medium residues 1101-1167_1206-1243
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14240.12 best YHYH 38.0 2.40e-09 41.9% 16.6%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jdmC01 6.20.30.20 Special › Other non-globular › Pemi-like Protein 1; Chain: D › 0.56 25.0 2.90e-01 89.5% 53.9%
3qwuA01 3.10.450.740 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 24.0 3.27e-01 100.0% 87.2%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1031149 3700.1.1.1 ↗ beta duplicates or obligate multimers › Immunodominant antigen Pgp3 N-terminal domain › Immunodominant antigen Pgp3 N-terminal domain › Immunodominant antigen Pgp3 N-terminal domain › Pgp3_N 0.54 24.0 2.88e-01 89.5% 58.6%
D10 medium residues 1380-1488
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dyiA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.65 36.0 4.02e-01 82.6% 69.0%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.62 41.0 4.69e-01 87.2% 92.4%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.57 36.0 3.93e-01 83.5% 78.2%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.53 41.0 4.31e-01 86.2% 91.8%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4521547 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.68 38.0 4.19e-01 80.7% 66.7%
4310178 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.68 37.0 4.09e-01 80.7% 65.6%
3787268 1.1.7.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.65 39.0 3.72e-01 82.6% 52.0%
2896442 1.1.7.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.64 37.0 4.03e-01 82.6% 67.7%
3442841 1.1.7.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.60 40.0 4.15e-01 85.3% 71.4%
3680792 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 38.0 3.97e-01 82.6% 77.0%