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IMGVR_UViG_3300020165_000035-3300020165-Ga0206125_100006151
Arc-VirIMGVR_UViG_3300020165_000035-3300020165-Ga0206125_100006151
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-115
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1nh8A03 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 39.0 | 4.88e-01 | 82.1% | 100.0% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.64 | 41.0 | 4.66e-01 | 84.8% | 88.0% |
| 4tkoB01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.62 | 42.0 | 4.56e-01 | 84.8% | 83.7% |
| 2cpjA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 40.0 | 4.26e-01 | 84.8% | 76.8% |
| 2l48A00 | 3.30.70.2030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 38.0 | 4.25e-01 | 97.3% | 84.7% |
| 3fawA01 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 38.0 | 4.18e-01 | 77.7% | 80.4% |
| 2jheA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 38.0 | 4.27e-01 | 78.6% | 88.9% |
| 3wdhA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 42.0 | 4.45e-01 | 99.1% | 87.5% |
| 3qfwA01 | 3.30.70.150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain | 0.58 | 46.0 | 4.80e-01 | 85.7% | 93.1% |
| 4aukA01 | 3.30.70.2810 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 38.0 | 4.38e-01 | 99.1% | 96.2% |
| 3qj4A02 | 3.90.660.10 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.57 | 46.0 | 4.00e-01 | 86.6% | 58.5% |
| 3n79A01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.57 | 38.0 | 4.42e-01 | 84.8% | 98.7% |
| 3to8A02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 41.0 | 4.44e-01 | 100.0% | 88.5% |
| 2a10D00 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.57 | 40.0 | 4.15e-01 | 84.8% | 79.4% |
| 2ewhA01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.56 | 39.0 | 4.30e-01 | 84.8% | 92.9% |
| 2zzeA03 | 2.40.30.130 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.56 | 34.0 | 3.61e-01 | 83.0% | 68.4% |
| 1v05A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 34.0 | 3.68e-01 | 92.0% | 72.9% |
| 2cpeA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 39.0 | 4.38e-01 | 80.4% | 100.0% |
| 4g65A04 | 3.30.70.1450 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain | 0.54 | 38.0 | 4.17e-01 | 92.9% | 91.2% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 34.0 | 3.79e-01 | 95.5% | 85.4% |
| 2cq4A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 42.0 | 4.52e-01 | 98.2% | 100.0% |
| 4v2bA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 38.0 | 3.95e-01 | 96.4% | 80.2% |
| 2dmcA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 34.0 | 3.93e-01 | 79.5% | 100.0% |
| 1ja1A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 41.0 | 4.08e-01 | 84.8% | 81.1% |
| 4clfA02 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.52 | 42.0 | 3.57e-01 | 85.7% | 56.0% |
| 2d7nA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 35.0 | 3.96e-01 | 84.8% | 100.0% |
| 1dn0D02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 3.81e-01 | 79.5% | 85.1% |
| 2rilA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 40.0 | 4.24e-01 | 87.5% | 97.9% |
| 4ckbD02 | 3.20.100.20 | Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › | 0.51 | 40.0 | 3.29e-01 | 83.0% | 82.0% |
| 3v8oA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 3.75e-01 | 100.0% | 82.5% |
| 3k7mX02 | 3.90.660.10 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.50 | 44.0 | 3.68e-01 | 99.1% | 58.3% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4215822 | 1.1.8.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel | 0.72 | 45.0 | 5.46e-01 | 75.9% | 100.0% |
| 3216247 | 1.1.7.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN | 0.67 | 43.0 | 4.74e-01 | 83.0% | 80.0% |
| 3237442 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 48.0 | 5.06e-01 | 85.7% | 85.0% |
| 3950185 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.65 | 47.0 | 5.18e-01 | 98.2% | 94.4% |
| 3568840 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.64 | 47.0 | 5.01e-01 | 96.4% | 89.5% |
| 3602442 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.64 | 46.0 | 4.72e-01 | 75.9% | 98.2% |
| 3803779 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.64 | 42.0 | 4.92e-01 | 83.9% | 98.7% |
| 3970319 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.62 | 46.0 | 5.02e-01 | 98.2% | 97.8% |
| 5034907 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.61 | 43.0 | 4.56e-01 | 85.7% | 85.3% |
| 3269851 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 47.0 | 4.82e-01 | 96.4% | 87.6% |
| 3239031 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.61 | 47.0 | 5.07e-01 | 94.6% | 98.9% |
| 3247948 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 43.0 | 4.20e-01 | 84.8% | 68.3% |
| 5061510 | 304.54.1.1 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like › BMC | 0.60 | 40.0 | 4.33e-01 | 84.8% | 81.1% |
| 3252482 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.59 | 41.0 | 4.37e-01 | 80.4% | 84.2% |
| 3552412 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.59 | 42.0 | 4.39e-01 | 95.5% | 83.0% |
| 4995815 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.58 | 41.0 | 3.96e-01 | 75.0% | 65.6% |
| 3972759 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 43.0 | 4.38e-01 | 84.8% | 81.8% |
| 3688604 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.57 | 49.0 | 5.07e-01 | 97.3% | 100.0% |
| 5081161 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.57 | 40.0 | 3.58e-01 | 72.3% | 63.9% |
| 1772309 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.57 | 44.0 | 4.16e-01 | 83.9% | 99.3% |
| 3868227 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 41.0 | 4.41e-01 | 93.8% | 91.6% |
| 3931247 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 45.0 | 4.18e-01 | 85.7% | 72.1% |
| 3687872 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.55 | 43.0 | 4.22e-01 | 84.8% | 84.0% |
| 3404823 | 304.9.1.81 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RBD_AKAP-17A | 0.55 | 48.0 | 4.81e-01 | 98.2% | 94.8% |
| 3761689 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.54 | 43.0 | 4.01e-01 | 85.7% | 78.6% |
| 4487146 | 244.1.1.33 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › PF30157 | 0.54 | 47.0 | 4.57e-01 | 96.4% | 88.0% |
| 3802666 | 207.1.1.133 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_14 | 0.53 | 47.0 | 3.16e-01 | 100.0% | 24.0% |
| 3250327 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 38.0 | 4.02e-01 | 97.3% | 86.0% |
| 3523254 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.52 | 44.0 | 3.77e-01 | 100.0% | 57.2% |
| 3058418 | 1.1.13.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach | 0.52 | 40.0 | 4.20e-01 | 85.7% | 91.2% |
| 3608430 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.52 | 40.0 | 3.75e-01 | 84.8% | 86.9% |
| 3401434 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 35.0 | 3.74e-01 | 78.6% | 81.1% |
| 3220389 | 206.1.1.72 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal | 0.51 | 37.0 | 2.72e-01 | 73.2% | 46.8% |
| 3522252 | 11.1.1.12 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin | 0.51 | 33.0 | 3.56e-01 | 92.0% | 75.8% |
| 3558448 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 36.0 | 3.78e-01 | 96.4% | 83.0% |
| 3876114 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 42.0 | 3.88e-01 | 100.0% | 68.7% |
| 4927706 | 304.5.1.2 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF190 | 0.51 | 40.0 | 4.23e-01 | 83.9% | 98.0% |
| 4401417 | 304.7.1.2 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 | 0.51 | 40.0 | 4.18e-01 | 96.4% | 93.0% |
| 3595090 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.50 | 43.0 | 3.77e-01 | 93.8% | 67.6% |
D2
high
residues 161-391
Domain cluster:
rep: MN136198.2__QEM43051.1__AC4HA13_0076__00076__D266-456