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IMGVR_UViG_3300020175_000783-3300020175-Ga0206124_100035015

Arc-Vir

IMGVR_UViG_3300020175_000783-3300020175-Ga0206124_100035015

Quality

84.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-171
PDB
D2 high residues 190-273
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.86 74.0 7.43e-01 100.0% 90.6%
2v31A01 2.40.30.180 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Ubiquitin-activating enzyme E1, FCCH domain 0.71 58.0 5.52e-01 100.0% 76.3%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 42.0 4.47e-01 82.1% 70.3%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 50.0 5.25e-01 100.0% 94.7%
2m5sA00 2.40.30.240 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.65 59.0 5.14e-01 100.0% 91.1%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.65 47.0 4.62e-01 100.0% 72.2%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.64 47.0 4.99e-01 100.0% 93.0%
1kzlA02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.64 56.0 5.26e-01 100.0% 78.2%
4g6iC02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.64 55.0 5.30e-01 100.0% 83.0%
3a35A01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.64 54.0 5.24e-01 100.0% 83.7%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 50.0 5.11e-01 100.0% 94.9%
2nv4A00 2.40.30.70 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like 0.61 56.0 4.77e-01 100.0% 89.4%
1z85A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.61 42.0 4.59e-01 82.1% 89.6%
5tr9A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 55.0 5.26e-01 100.0% 92.7%
2bhgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 42.0 3.99e-01 82.1% 60.8%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 53.0 5.01e-01 100.0% 91.0%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 34.0 4.12e-01 70.2% 100.0%
1qdlB00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.58 41.0 3.18e-01 73.8% 62.1%
1nxzA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.58 42.0 4.47e-01 82.1% 88.9%
4aqzA00 2.60.40.3470 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 43.0 3.76e-01 83.3% 73.9%
1tvcA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 49.0 4.54e-01 100.0% 89.0%
2egvA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.56 39.0 4.22e-01 82.1% 90.9%
1kkeA02 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.56 48.0 4.15e-01 100.0% 71.6%
2e8yA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 44.0 4.16e-01 97.6% 72.3%
4j3cA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.55 37.0 4.06e-01 82.1% 90.6%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.53 48.0 4.57e-01 100.0% 89.7%
2ls6A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 45.0 3.74e-01 100.0% 65.2%
1mfnA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.93e-01 100.0% 77.4%
8eq1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.52 47.0 4.66e-01 100.0% 98.9%
7r6yA01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.52 46.0 4.53e-01 100.0% 98.9%
3zxaC02 2.60.40.3420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 4.05e-01 100.0% 96.2%
3r8qA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.83e-01 100.0% 78.9%
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.82e-01 100.0% 80.5%
5jbdA03 3.20.20.470 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glucansucrase 0.51 43.0 2.88e-01 100.0% 21.3%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.50 42.0 4.35e-01 94.0% 98.7%
4v15A01 2.40.37.20 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › D-serine dehydratase-like domain 0.50 42.0 3.64e-01 97.6% 66.7%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1030933 1.1.7.29 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › End_beta_barrel 0.86 74.0 7.29e-01 100.0% 86.5%
5079674 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.72 54.0 5.69e-01 100.0% 88.0%
2448699 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 49.0 5.30e-01 98.8% 94.1%
3513769 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.68 50.0 5.27e-01 100.0% 86.7%
3251646 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.66 46.0 4.77e-01 100.0% 77.5%
1175750 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.65 41.0 4.25e-01 70.2% 67.5%
4083044 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.65 49.0 5.13e-01 100.0% 92.0%
2048195 3734.1.1.1 beta barrels › P22 coat protein insertion domain › P22 coat protein insertion domain › P22 coat protein insertion domain › P22_CoatProtein 0.61 55.0 4.80e-01 100.0% 89.0%
4867073 2485.3.1.8 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › P22_CoatProtein 0.61 53.0 4.92e-01 100.0% 93.8%
5002388 1.1.7.13 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › TrmO 0.61 55.0 4.80e-01 100.0% 92.0%
3397088 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 53.0 4.82e-01 100.0% 95.7%
4283757 1.1.7.13 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › TrmO 0.61 55.0 4.52e-01 100.0% 79.2%
1714452 11.21.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like 0.60 51.0 5.12e-01 100.0% 89.7%
3247934 1.1.7.41 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom 0.60 53.0 5.13e-01 100.0% 90.5%
3613937 1.1.7.13 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › TrmO 0.60 52.0 4.33e-01 97.6% 79.9%
3969735 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 40.0 4.29e-01 82.1% 81.4%
4974346 1.1.7.13 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › TrmO 0.60 54.0 4.45e-01 100.0% 79.3%
4946709 1.1.7.13 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › TrmO 0.60 54.0 4.57e-01 100.0% 85.6%
3932819 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.60 53.0 4.81e-01 100.0% 89.6%
1714447 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.60 51.0 4.35e-01 100.0% 59.1%
3944437 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 47.0 4.77e-01 100.0% 92.5%
5002155 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 52.0 4.96e-01 98.8% 87.0%
1954233 11.21.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like 0.59 51.0 5.04e-01 100.0% 91.0%
4939996 1.1.7.46 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B 0.59 53.0 4.97e-01 100.0% 81.9%
5003841 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 51.0 4.74e-01 100.0% 92.7%
3640551 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 52.0 4.42e-01 100.0% 86.7%
3805726 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 50.0 4.47e-01 100.0% 94.2%
3262495 11.1.1.802 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 0.56 41.0 4.15e-01 100.0% 80.0%
314850 5092.1.1.2 beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Reo_sigma1 0.56 48.0 3.96e-01 100.0% 62.0%
3965822 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 50.0 4.93e-01 100.0% 94.4%
3448171 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 49.0 4.36e-01 98.8% 90.0%
4221191 11.1.5.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM_2 0.55 44.0 4.33e-01 91.7% 98.9%
4949065 1.1.7.13 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › TrmO 0.55 45.0 4.15e-01 92.9% 71.9%
4625449 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 48.0 4.72e-01 100.0% 97.8%
4360808 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 41.0 3.93e-01 83.3% 97.1%
3953578 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.54 47.0 4.15e-01 100.0% 75.4%
3735267 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 46.0 4.67e-01 97.6% 95.3%
3807201 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 47.0 4.42e-01 98.8% 91.4%
4457938 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.53 46.0 4.10e-01 100.0% 72.8%
4157473 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.53 47.0 4.15e-01 100.0% 77.6%
4631894 1.1.12.1 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.53 44.0 4.03e-01 96.4% 67.8%
3268668 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 4.09e-01 100.0% 85.9%
4846224 929.1.1.2 beta duplicates or obligate multimers › Resistin › Resistin › Resistin › PCSK9_C1 0.52 38.0 3.85e-01 100.0% 78.4%
3508592 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.52 40.0 3.58e-01 100.0% 56.9%
5057186 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 44.0 4.39e-01 100.0% 96.7%
4638802 11.1.1.949 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28476 0.51 44.0 4.08e-01 98.8% 81.8%
3966310 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 45.0 4.39e-01 100.0% 97.9%
3264430 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 4.07e-01 98.8% 90.5%
3845669 11.1.1.396 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Anth_Ig 0.51 42.0 4.14e-01 100.0% 91.6%
3889990 11.1.1.396 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Anth_Ig 0.50 43.0 3.81e-01 95.2% 70.7%
D3 high residues 277-338
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x5aA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 48.0 4.29e-01 98.4% 61.5%
4il7A00 2.60.120.1300 Mainly Beta › Sandwich › Jelly Rolls › 0.58 42.0 3.89e-01 100.0% 58.8%
3zyzA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 3.71e-01 96.8% 78.8%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 41.0 3.93e-01 85.5% 92.4%
1ex0A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 3.92e-01 100.0% 87.7%
4cbpA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 3.81e-01 96.8% 74.5%
4a5wA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.84e-01 98.4% 83.8%
6qe7A01 3.90.182.10 Alpha Beta › Alpha-Beta Complex › Toxin - Anthrax Protective Antigen; domain 1 › Toxin - Anthrax Protective Antigen;domain 1 0.53 45.0 3.60e-01 100.0% 78.7%
2crmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.95e-01 96.8% 72.2%
1tnrA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 42.0 3.44e-01 100.0% 85.4%
3hqiA01 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.52 44.0 3.53e-01 100.0% 88.3%
1bdyA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 43.0 3.58e-01 98.4% 69.9%
1flkA00 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.52 44.0 3.15e-01 100.0% 67.3%
4ncdA02 2.60.40.3970 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.93e-01 98.4% 71.6%
8bvoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.91e-01 98.4% 74.4%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3334605 10.32.1.192 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID 0.67 57.0 4.16e-01 100.0% 68.6%
3636445 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 50.0 3.80e-01 100.0% 75.8%
3608837 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.58 48.0 3.75e-01 100.0% 80.6%
5040272 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 48.0 4.54e-01 100.0% 85.0%
3714935 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 47.0 3.71e-01 100.0% 83.2%
5062347 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 44.0 4.25e-01 100.0% 77.3%
3957104 11.13.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › MspA 0.56 45.0 3.38e-01 98.4% 65.3%
5001251 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 48.0 4.26e-01 100.0% 71.1%
3846627 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.86e-01 96.8% 64.0%
3348395 10.2.1.55 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL 0.52 43.0 3.77e-01 100.0% 82.9%
3508722 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 43.0 3.61e-01 100.0% 51.7%
157845 11.2.1.16 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PKC_C2 0.51 42.0 3.49e-01 98.4% 67.5%
5075171 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.50 42.0 3.77e-01 100.0% 66.3%
4278212 1.1.7.50 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.50 35.0 2.90e-01 77.4% 97.7%