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IMGVR_UViG_3300020185_000107-3300020185-Ga0206131_1000086913

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300020185_000107-3300020185-Ga0206131_1000086913 ↗
Kingdom:: archaea

Quality

74.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-101_404-417

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF11246.15 best	Phage_gp53	21.6	2.10e-04	79.5%	16.5%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5004560	101.15.1.1 ↗	alpha arrays › HTH › LysM domain › LysM domain › LysM	0.69	45.0	5.40e-01	74.7%	100.0%
4959557	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.59	44.0	4.70e-01	78.3%	100.0%

D2 medium residues 133-236_259-269

PDB

Domain cluster: rep: MN018232.1__QDH50589.1__X__00123__D102-193_212-225

CATH (19)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3gqbA01	2.40.30.20	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 ›	0.72	44.0	5.44e-01	73.0%	100.0%
2j5uA02	2.40.10.340	Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1	0.65	45.0	5.19e-01	75.7%	98.8%
3ne5C02	2.40.30.170	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain	0.62	45.0	4.75e-01	74.8%	97.1%
4ac9C04	2.40.10.190	Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4	0.61	40.0	4.60e-01	73.9%	95.0%
4nzfD02	2.60.40.1180	Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II	0.60	37.0	4.14e-01	93.0%	78.9%
4tkoB01	2.40.30.170	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain	0.59	43.0	4.68e-01	74.8%	98.9%
3fppA01	2.40.30.170	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain	0.59	45.0	4.78e-01	81.7%	96.2%
7plsA02	2.60.40.1180	Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II	0.59	38.0	4.11e-01	73.0%	79.6%
3a35A01	2.40.30.20	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 ›	0.57	43.0	4.71e-01	80.9%	98.9%
4kx7A01	2.60.40.1730	Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain	0.56	37.0	3.06e-01	71.3%	35.2%
1pk6C00	2.60.120.40	Mainly Beta › Sandwich › Jelly Rolls ›	0.55	41.0	3.97e-01	77.4%	98.4%
1kjzA03	2.40.30.10	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors	0.55	39.0	4.24e-01	83.5%	91.3%
4psrA02	2.60.40.1180	Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II	0.54	37.0	3.72e-01	75.7%	68.0%
3zn6A02	2.60.40.3410	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.53	36.0	4.07e-01	70.4%	100.0%
3bnwB00	2.40.30.30	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like	0.53	47.0	4.25e-01	98.3%	87.9%
4zgnB00	2.40.30.10	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors	0.52	38.0	4.05e-01	86.1%	86.4%
1e57B00	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.52	37.0	3.21e-01	73.9%	82.0%
5vqfD01	2.60.120.970	Mainly Beta › Sandwich › Jelly Rolls ›	0.52	42.0	3.43e-01	89.6%	47.3%
2ylkA00	2.60.40.710	Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like	0.51	37.0	3.44e-01	74.8%	60.0%

ECOD (20)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5078307	11.21.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein	0.82	53.0	6.50e-01	93.0%	100.0%
4880414	1.1.7.17 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N	0.73	44.0	5.43e-01	71.3%	100.0%
3204011	1.1.7.17 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N	0.71	44.0	4.89e-01	73.0%	78.9%
4060488	1.1.7.17 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N	0.68	45.0	5.26e-01	77.4%	97.5%
5078547	1.1.7.17 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N	0.67	45.0	4.93e-01	93.0%	83.2%
4933363	1.1.7.20 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1	0.67	43.0	5.12e-01	73.9%	100.0%
4945432	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.66	46.0	5.22e-01	76.5%	96.5%
5000784	1.1.7.20 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1	0.65	47.0	5.03e-01	76.5%	100.0%
3367701	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.64	45.0	4.74e-01	73.0%	99.0%
3292420	1.1.7.17 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N	0.64	47.0	5.23e-01	93.0%	98.9%
3996398	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.63	42.0	4.80e-01	74.8%	92.9%
5041618	1.1.7.20 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1	0.62	47.0	5.16e-01	93.9%	97.9%
3930882	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.62	43.0	4.62e-01	70.4%	97.9%
3937123	1.1.7.20 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1	0.61	43.0	4.63e-01	75.7%	87.4%
3539303	10.2.1.0 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins)	0.59	43.0	3.58e-01	75.7%	69.5%
2869319	1.1.7.20 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1	0.58	42.0	4.51e-01	75.7%	87.8%
3267248	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.55	39.0	4.18e-01	97.4%	88.4%
3810482	1.1.7.46 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B	0.53	46.0	4.40e-01	95.7%	100.0%
3492758	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.51	36.0	3.40e-01	73.9%	61.4%
3742620	11.1.5.7 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub	0.51	33.0	3.39e-01	73.9%	66.1%