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IMGVR_UViG_3300020185_000107-3300020185-Ga0206131_100008698
Arc-VirIMGVR_UViG_3300020185_000107-3300020185-Ga0206131_100008698
Identity
- Kingdom:
- archaea
Quality
94.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-73
Domain cluster:
representative
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4999058 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.63 | 35.0 | 3.23e-01 | 84.9% | 41.1% |
| 3771742 | 109.3.1.170 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_4 | 0.57 | 39.0 | 3.02e-01 | 97.3% | 30.3% |
| 4996897 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.56 | 41.0 | 3.31e-01 | 79.5% | 40.7% |
D2
medium
residues 74-194
Domain cluster:
rep: pig_ID_885_F13_scaffold_14_curated_prodigal-single.1__X__X__00025__D20-178
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kwaA00 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.67 | 38.0 | 4.16e-01 | 78.5% | 66.3% |
| 1usyC00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.60 | 44.0 | 3.36e-01 | 75.2% | 93.8% |
| 6ctzA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 35.0 | 3.88e-01 | 76.9% | 73.1% |
| 3lzhA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 33.0 | 3.76e-01 | 70.2% | 71.4% |
| 1bdfA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.59 | 39.0 | 4.15e-01 | 77.7% | 76.4% |
| 4noiA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.58 | 38.0 | 4.13e-01 | 79.3% | 78.6% |
| 3atsA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 38.0 | 3.90e-01 | 71.9% | 70.7% |
| 3s1sA02 | 3.40.50.12420 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 48.0 | 3.33e-01 | 93.4% | 70.5% |
| 1qf6A02 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.56 | 38.0 | 3.98e-01 | 81.8% | 78.3% |
| 2ar0A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 47.0 | 3.53e-01 | 96.7% | 91.1% |
| 3khkA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 46.0 | 3.46e-01 | 92.6% | 89.6% |
| 1j6rA00 | 3.40.109.40 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › | 0.55 | 38.0 | 3.27e-01 | 71.9% | 97.0% |
| 3lkdA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 47.0 | 3.58e-01 | 94.2% | 96.5% |
| 1j1fA00 | 3.90.730.10 | Alpha Beta › Alpha-Beta Complex › Ribonuclease Rh; Chain A › Ribonuclease T2-like | 0.53 | 46.0 | 4.02e-01 | 96.7% | 84.3% |
| 2bhgA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 31.0 | 3.43e-01 | 74.4% | 72.8% |
| 3ufbA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 45.0 | 3.40e-01 | 95.9% | 82.5% |
| 2v94B00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 37.0 | 4.13e-01 | 95.0% | 95.7% |
| 1o75A03 | 2.60.40.1300 | Mainly Beta › Sandwich › Immunoglobulin-like › Penicillin-binding protein Tp47, domain C | 0.52 | 40.0 | 3.93e-01 | 80.2% | 75.8% |
| 2xzmP00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 38.0 | 3.59e-01 | 96.7% | 62.2% |
| 2f8lA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 43.0 | 3.46e-01 | 89.3% | 82.2% |
| 5optY00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 37.0 | 3.75e-01 | 96.7% | 75.6% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5081052 | 307.1.1.5 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15_3 | 0.70 | 53.0 | 4.99e-01 | 85.1% | 65.5% |
| 3603235 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.69 | 39.0 | 4.24e-01 | 73.6% | 67.0% |
| 4120064 | 2003.1.5.62 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I | 0.57 | 45.0 | 3.52e-01 | 86.8% | 99.3% |
| 3165967 | 3313.1.1.1 ↗ | a+b two layers › Uncharacterized protein VC_A0919 › Uncharacterized protein VC_A0919 › Uncharacterized protein VC_A0919 › DUF406 | 0.56 | 34.0 | 3.87e-01 | 76.0% | 80.0% |
| 5021590 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.56 | 48.0 | 3.50e-01 | 94.2% | 84.9% |
| 5032412 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.56 | 48.0 | 3.55e-01 | 94.2% | 85.3% |
| 185519 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.55 | 47.0 | 3.57e-01 | 91.7% | 94.1% |
| 3281355 | 304.12.1.12 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › GDH_ACT2 | 0.55 | 37.0 | 3.91e-01 | 78.5% | 77.1% |
| 3970301 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.55 | 48.0 | 3.42e-01 | 96.7% | 79.2% |
| 4968431 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.55 | 46.0 | 3.68e-01 | 94.2% | 97.3% |
| 4096139 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.54 | 39.0 | 4.33e-01 | 96.7% | 96.8% |
| 3804095 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.54 | 41.0 | 3.77e-01 | 79.3% | 60.4% |
| 5078837 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.54 | 39.0 | 4.35e-01 | 99.2% | 96.8% |
| 5079994 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.54 | 39.0 | 4.27e-01 | 95.9% | 94.7% |
| 4988678 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.54 | 38.0 | 4.05e-01 | 95.9% | 84.8% |
| 4296415 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.54 | 39.0 | 4.20e-01 | 96.7% | 91.0% |
| 4206503 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.54 | 39.0 | 3.95e-01 | 96.7% | 75.8% |
| 4019213 | 304.54.1.3 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like › ACT-like | 0.54 | 34.0 | 3.52e-01 | 74.4% | 66.1% |
| 3831135 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.53 | 40.0 | 3.80e-01 | 79.3% | 69.7% |
| 3324572 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.53 | 40.0 | 3.56e-01 | 79.3% | 64.6% |
| 5064549 | 304.109.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e | 0.53 | 36.0 | 4.07e-01 | 93.4% | 93.3% |
| 5049105 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.53 | 39.0 | 3.98e-01 | 97.5% | 80.0% |
| 5034761 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.53 | 38.0 | 4.05e-01 | 95.9% | 85.7% |
| None | — | 0.53 | 45.0 | 3.37e-01 | 95.0% | 78.5% | |
| 5037827 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.53 | 45.0 | 3.51e-01 | 94.2% | 95.3% |
| 3942577 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.53 | 45.0 | 3.38e-01 | 93.4% | 86.5% |
| 4956430 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.53 | 37.0 | 4.21e-01 | 95.9% | 98.9% |
| 4552418 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.53 | 40.0 | 3.65e-01 | 79.3% | 68.5% |
| 4255519 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.53 | 44.0 | 3.28e-01 | 93.4% | 83.2% |
| 5058995 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.53 | 38.0 | 4.15e-01 | 95.9% | 94.7% |
| 4102797 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.53 | 38.0 | 4.16e-01 | 96.7% | 92.0% |
| 3958868 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.53 | 45.0 | 3.35e-01 | 94.2% | 86.6% |
| 3965017 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.53 | 45.0 | 3.43e-01 | 94.2% | 74.1% |
| 3964345 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.53 | 44.0 | 3.30e-01 | 94.2% | 76.2% |
| 1421655 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.52 | 38.0 | 3.60e-01 | 96.7% | 62.2% |
| None | — | 0.52 | 44.0 | 3.41e-01 | 92.6% | 88.4% | |
| None | — | 0.52 | 44.0 | 3.45e-01 | 95.0% | 91.5% | |
| 4936732 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.52 | 44.0 | 3.26e-01 | 95.0% | 72.9% |
| 5027669 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.52 | 44.0 | 3.31e-01 | 95.0% | 78.2% |
| 4638792 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.52 | 38.0 | 4.05e-01 | 96.7% | 90.3% |
| 3722817 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.52 | 39.0 | 2.78e-01 | 80.2% | 54.0% |
| 1548119 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.52 | 43.0 | 3.47e-01 | 90.1% | 95.0% |
| 4943278 | 304.109.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e | 0.51 | 37.0 | 4.05e-01 | 95.9% | 95.8% |
| 3649918 | 11.1.1.389 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › EDR2_C | 0.51 | 45.0 | 3.66e-01 | 98.3% | 77.5% |
| 4066506 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.51 | 37.0 | 3.95e-01 | 97.5% | 88.6% |
| 4968748 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.51 | 35.0 | 3.88e-01 | 93.4% | 90.5% |
| 4998224 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.51 | 37.0 | 4.05e-01 | 96.7% | 97.9% |
| 5054443 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.51 | 37.0 | 3.99e-01 | 95.9% | 92.0% |
| 4942718 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.50 | 37.0 | 3.94e-01 | 96.7% | 92.0% |