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IMGVR_UViG_3300020200_001802-3300020200-Ga0194121_100146858
Arc-VirIMGVR_UViG_3300020200_001802-3300020200-Ga0194121_100146858
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 35-55_83-202_220-310
Domain cluster:
rep: IMGVR_UViG_3300032007_000207-3300032007-Ga0310695_100025474__D117-137_157-373
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bjqA00 | 3.90.1690.10 | Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain | 0.74 | 70.0 | 6.41e-01 | 100.0% | 92.6% |
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.68 | 22.0 | 3.50e-01 | 80.6% | 72.2% |
| 1jw3A00 | 3.55.10.10 | Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain | 0.67 | 26.0 | 3.30e-01 | 95.3% | 56.4% |
| 3qkbA00 | 3.30.110.70 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B | 0.67 | 29.0 | 4.35e-01 | 93.1% | 96.8% |
| 4acvA00 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.66 | 26.0 | 3.49e-01 | 87.5% | 65.5% |
| 6toaF01 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.66 | 27.0 | 3.52e-01 | 86.2% | 64.6% |
| 2nyiA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.65 | 20.0 | 3.23e-01 | 84.1% | 67.8% |
| 2mq8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.65 | 21.0 | 2.96e-01 | 81.0% | 55.4% |
| 2bkyX00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.63 | 20.0 | 3.17e-01 | 80.6% | 69.8% |
| 6ofsA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.62 | 24.0 | 2.74e-01 | 85.8% | 42.4% |
| 5a2fA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 21.0 | 3.02e-01 | 87.1% | 63.4% |
| 3onrJ00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.59 | 20.0 | 3.45e-01 | 84.5% | 95.6% |
| 1ekrA00 | 3.30.70.640 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain | 0.59 | 26.0 | 3.24e-01 | 82.8% | 62.9% |
| 3o4oB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 21.0 | 3.03e-01 | 86.6% | 65.1% |
| 3o3uN03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 21.0 | 3.01e-01 | 87.5% | 64.9% |
| 3fz2A00 | 3.30.70.1700 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U | 0.59 | 25.0 | 3.22e-01 | 86.6% | 65.6% |
| 1kcvL02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 20.0 | 2.93e-01 | 86.6% | 65.0% |
| 3amiA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 22.0 | 2.39e-01 | 86.6% | 41.7% |
| 3qw9B00 | 2.60.40.4100 | Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-C domain | 0.50 | 24.0 | 2.79e-01 | 90.5% | 59.0% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3513770 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.87 | 81.0 | 7.35e-01 | 97.0% | 93.3% |
| 4929755 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.86 | 81.0 | 7.59e-01 | 97.4% | 88.4% |
| 3075730 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.86 | 82.0 | 7.13e-01 | 98.7% | 88.4% |
| 3090875 | 2485.3.1.14 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp10A-like | 0.85 | 80.0 | 7.17e-01 | 97.4% | 93.8% |
| 3110786 | 2485.3.1.14 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp10A-like | 0.84 | 80.0 | 6.81e-01 | 97.4% | 86.3% |
| 2995325 | 2485.3.1.9 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 | 0.84 | 80.0 | 6.72e-01 | 99.6% | 91.0% |
| 2988313 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.84 | 80.0 | 7.49e-01 | 97.8% | 91.2% |
| 4890673 | 2485.3.1.9 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 | 0.84 | 80.0 | 6.82e-01 | 99.1% | 92.0% |
| 3963274 | 2485.3.1.9 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 | 0.83 | 77.0 | 6.48e-01 | 96.6% | 100.0% |
| 4241362 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.82 | 77.0 | 7.04e-01 | 97.8% | 91.5% |
| 3949155 | 2485.3.1.11 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like | 0.82 | 77.0 | 7.29e-01 | 97.4% | 90.9% |
| 4313471 | 2485.3.1.11 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like | 0.81 | 78.0 | 7.05e-01 | 100.0% | 88.3% |
| 2651377 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.81 | 76.0 | 6.89e-01 | 97.4% | 89.2% |
| 3946670 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.81 | 76.0 | 7.11e-01 | 97.4% | 87.6% |
| 2989372 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.80 | 76.0 | 6.78e-01 | 97.4% | 90.8% |
| 5081487 | 2485.3.1.10 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 | 0.80 | 75.0 | 7.03e-01 | 97.4% | 99.6% |
| 3501742 | 2485.3.1.21 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phi29_MCP | 0.80 | 74.0 | 6.63e-01 | 96.6% | 92.9% |
| 2968064 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.80 | 75.0 | 6.45e-01 | 98.7% | 92.8% |
| 3088027 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.80 | 75.0 | 7.09e-01 | 97.4% | 90.7% |
| 2989506 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.79 | 75.0 | 6.84e-01 | 98.3% | 96.6% |
| 2538948 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.79 | 75.0 | 6.80e-01 | 98.7% | 89.3% |
| 3583655 | 2485.3.1.5 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 | 0.79 | 74.0 | 6.56e-01 | 97.4% | 91.3% |
| 3942344 | 2485.3.1.19 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › PF30928 | 0.79 | 74.0 | 6.65e-01 | 97.4% | 89.8% |
| 4884207 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.79 | 73.0 | 6.72e-01 | 97.0% | 90.7% |
| 3977985 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.79 | 73.0 | 6.26e-01 | 97.0% | 75.3% |
| 2989356 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.79 | 74.0 | 6.76e-01 | 98.3% | 92.5% |
| 2989363 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.78 | 73.0 | 6.54e-01 | 97.4% | 91.2% |
| 3944238 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.77 | 72.0 | 6.66e-01 | 97.4% | 97.9% |
| 5081698 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.77 | 72.0 | 6.47e-01 | 97.4% | 92.1% |
| 1877546 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.77 | 71.0 | 6.47e-01 | 97.4% | 91.0% |
| 4955362 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.76 | 69.0 | 6.94e-01 | 96.6% | 94.0% |
| 3952452 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.75 | 71.0 | 6.47e-01 | 98.3% | 88.7% |
| 2899245 | 2485.3.1.10 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 | 0.75 | 71.0 | 6.08e-01 | 98.7% | 91.1% |
| 2639625 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.75 | 71.0 | 6.60e-01 | 98.7% | 89.3% |
| 2995627 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.75 | 69.0 | 6.31e-01 | 97.4% | 90.7% |
| 2640765 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.75 | 69.0 | 5.94e-01 | 97.8% | 93.8% |
| 333200 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.75 | 71.0 | 6.40e-01 | 99.6% | 92.7% |
| 4954548 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.74 | 69.0 | 6.47e-01 | 97.8% | 94.2% |
| 5083079 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.73 | 68.0 | 5.99e-01 | 97.0% | 82.5% |
| 3603036 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.73 | 68.0 | 6.58e-01 | 97.4% | 92.2% |
| 2724409 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.72 | 67.0 | 6.38e-01 | 97.0% | 87.9% |
| 2806362 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.71 | 66.0 | 6.30e-01 | 97.0% | 87.2% |
| 2553816 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.71 | 65.0 | 6.25e-01 | 97.0% | 87.9% |
| 5083777 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.70 | 66.0 | 6.02e-01 | 98.7% | 88.0% |
| 4995674 | 2485.3.1.5 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 | 0.70 | 67.0 | 6.43e-01 | 100.0% | 89.1% |
| 3977525 | 2485.3.1.4 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_P2 | 0.70 | 65.0 | 5.74e-01 | 100.0% | 88.0% |
| 2806361 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.69 | 64.0 | 6.18e-01 | 97.4% | 90.0% |
| 3587769 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.69 | 65.0 | 6.01e-01 | 100.0% | 91.0% |
| 3277785 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.69 | 63.0 | 6.10e-01 | 96.6% | 88.1% |
| 3588084 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.66 | 61.0 | 5.52e-01 | 97.0% | 87.9% |
| 3610546 | 872.3.1.0 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like | 0.66 | 32.0 | 4.60e-01 | 93.1% | 100.0% |
| 3391269 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.64 | 23.0 | 3.27e-01 | 84.5% | 65.2% |
| 3959344 | 872.3.1.1 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 | 0.61 | 30.0 | 4.17e-01 | 89.7% | 93.9% |
| 5013821 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.61 | 26.0 | 3.49e-01 | 90.9% | 74.2% |
| 4246266 | 11.31.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Beta-galactosidase LacA beta-sandwich domain › Beta-galactosidase LacA beta-sandwich domain › BetaGal_dom2 | 0.60 | 17.0 | 2.56e-01 | 81.0% | 53.0% |
| 3931456 | 304.42.1.1 ↗ | a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC | 0.58 | 26.0 | 2.98e-01 | 83.6% | 52.9% |
| 3875231 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.57 | 18.0 | 2.48e-01 | 87.1% | 49.2% |
| 3290943 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 21.0 | 2.95e-01 | 87.1% | 69.5% |
| 3948250 | 304.124.1.9 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_terminator_9 | 0.52 | 25.0 | 3.05e-01 | 86.6% | 66.5% |