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IMGVR_UViG_3300020214_001091-3300020214-Ga0194132_100373983

Arc-Vir

IMGVR_UViG_3300020214_001091-3300020214-Ga0194132_100373983

Quality

83.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 66-174
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24608.3 best PDDEXK_15 44.0 3.30e-11 95.4% 54.9%
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a79A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.65 43.0 4.45e-01 82.6% 72.0%
2zyzC00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.65 39.0 4.14e-01 83.5% 66.7%
3syyA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.65 45.0 3.66e-01 82.6% 39.7%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.65 41.0 4.40e-01 83.5% 74.7%
3h4rA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.64 46.0 3.66e-01 82.6% 37.4%
6iw2A01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.63 40.0 3.79e-01 93.6% 53.4%
3ieyB00 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.62 40.0 3.59e-01 83.5% 46.7%
4ls9B02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.62 56.0 5.39e-01 100.0% 87.8%
1ewqB01 3.40.1170.10 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I 0.61 43.0 4.18e-01 72.5% 84.7%
3devA02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.60 53.0 5.21e-01 100.0% 92.2%
3ieyA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.59 40.0 4.18e-01 83.5% 75.0%
2eo0B00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.59 47.0 4.52e-01 100.0% 75.0%
5z1gB01 3.40.50.10480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain 0.58 42.0 3.40e-01 75.2% 92.2%
3ktzA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.58 43.0 3.78e-01 79.8% 99.4%
1iftA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.57 41.0 3.53e-01 74.3% 99.4%
7sebA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 26.0 3.61e-01 74.3% 97.7%
3n2qA02 3.30.300.190 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.56 46.0 4.56e-01 88.1% 84.5%
6upsA01 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.56 49.0 4.40e-01 98.2% 83.2%
5ghrA02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.56 50.0 4.79e-01 100.0% 88.8%
2qwvA00 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.55 47.0 3.92e-01 92.7% 76.6%
2qx2A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.55 48.0 3.42e-01 95.4% 78.0%
4hn3A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.54 45.0 3.16e-01 88.1% 29.5%
3cj1A02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.54 39.0 2.95e-01 74.3% 63.5%
1rznA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.54 48.0 4.38e-01 100.0% 75.3%
2o8bA04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.54 31.0 3.50e-01 89.0% 73.5%
3h5kA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.54 40.0 3.47e-01 79.8% 99.4%
6mtzA01 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.54 47.0 4.75e-01 96.3% 100.0%
2w42B02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 46.0 3.58e-01 94.5% 73.2%
4kreA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 44.0 3.40e-01 93.6% 73.2%
4rcjA01 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.52 42.0 3.82e-01 88.1% 96.6%
3fovA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.51 37.0 3.87e-01 85.3% 82.4%
4ftfA00 3.30.300.250 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.51 40.0 4.06e-01 84.4% 85.3%
3e38B01 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.50 45.0 3.50e-01 100.0% 78.4%
3ndhA00 3.40.600.30 Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › 0.50 38.0 3.16e-01 81.7% 78.0%
6lpmA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.50 44.0 3.47e-01 100.0% 69.9%
2hqsA01 3.40.50.10070 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TolB, N-terminal domain 0.50 43.0 3.95e-01 93.6% 90.8%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4947849 2008.2.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.67 41.0 4.43e-01 82.6% 70.5%
3588817 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.67 56.0 5.50e-01 100.0% 84.2%
5069954 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.66 49.0 4.82e-01 97.2% 72.0%
1171244 2008.2.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.65 39.0 4.14e-01 83.5% 66.7%
3692925 5104.1.1.3 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 0.64 57.0 5.14e-01 100.0% 94.8%
1392754 2008.2.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.63 40.0 4.29e-01 82.6% 73.7%
3941868 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.62 56.0 5.22e-01 100.0% 85.2%
3972957 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.62 56.0 5.21e-01 100.0% 83.7%
3839415 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.62 52.0 5.22e-01 99.1% 91.8%
3605286 2008.2.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.62 41.0 4.29e-01 83.5% 74.0%
5061891 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.61 54.0 5.26e-01 99.1% 89.0%
3588369 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.61 54.0 5.29e-01 100.0% 89.2%
3833842 7502.1.1.2 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix 0.61 44.0 3.47e-01 76.1% 92.9%
4264117 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.60 52.0 5.11e-01 100.0% 88.7%
4437758 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.60 54.0 5.12e-01 100.0% 93.8%
5038038 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.60 52.0 5.18e-01 99.1% 91.3%
5030203 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.60 54.0 5.09e-01 100.0% 87.7%
4940995 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 42.0 4.25e-01 99.1% 71.8%
4975955 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.60 53.0 5.05e-01 100.0% 90.8%
5022411 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.59 53.0 5.25e-01 100.0% 96.5%
5066835 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.59 52.0 4.97e-01 100.0% 88.5%
4942264 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.59 46.0 4.48e-01 98.2% 74.4%
4461627 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.59 52.0 4.99e-01 100.0% 93.1%
5025732 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.59 52.0 5.03e-01 100.0% 91.2%
4941326 2008.2.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.59 41.0 4.23e-01 81.7% 75.2%
4946143 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 48.0 4.53e-01 98.2% 72.6%
5074659 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.58 52.0 4.87e-01 100.0% 88.1%
4666603 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.58 51.0 4.55e-01 99.1% 74.8%
4244535 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.58 51.0 4.42e-01 100.0% 61.8%
4948107 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.58 52.0 5.05e-01 100.0% 95.0%
4578666 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.58 52.0 5.00e-01 100.0% 93.6%
5061465 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.58 52.0 4.98e-01 100.0% 90.4%
4055915 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.57 51.0 4.99e-01 100.0% 90.8%
2570277 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.57 50.0 4.79e-01 100.0% 85.5%
4012195 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.57 50.0 4.71e-01 100.0% 89.6%
3638578 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 33.0 3.86e-01 89.9% 82.1%
4167287 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.56 50.0 4.81e-01 100.0% 90.2%
5021190 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.56 40.0 3.59e-01 94.5% 54.0%
4928866 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.55 40.0 3.84e-01 94.5% 64.6%
4961220 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.54 38.0 3.50e-01 94.5% 54.5%
3961866 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.54 44.0 4.16e-01 90.8% 73.8%
3210459 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 48.0 4.09e-01 100.0% 60.0%
3839890 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.54 45.0 3.29e-01 98.2% 31.4%
5079182 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.54 47.0 4.56e-01 100.0% 96.7%
3693105 7502.1.1.2 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix 0.53 40.0 3.01e-01 78.9% 86.2%
1145719 2008.1.1.62 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ThaI 0.53 39.0 3.22e-01 78.9% 76.1%
3600702 601.23.1.0 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.53 32.0 2.31e-01 90.8% 21.0%
3508465 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.53 32.0 2.44e-01 90.8% 25.0%
4405736 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.52 30.0 2.19e-01 89.9% 19.7%
3618900 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.51 33.0 3.43e-01 91.7% 70.0%
3622749 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.51 31.0 2.28e-01 92.7% 20.3%
4421536 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.51 30.0 2.22e-01 90.8% 20.3%
3956183 323.1.1.5 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.51 42.0 3.55e-01 92.7% 65.1%
3546666 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.51 44.0 3.84e-01 95.4% 85.9%
3798149 601.23.1.0 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.50 31.0 2.30e-01 91.7% 22.0%