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IMGVR_UViG_3300020248_000137-3300020248-Ga0211584_10004881
Arc-VirIMGVR_UViG_3300020248_000137-3300020248-Ga0211584_10004881
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 35-90_160-173
Domain cluster:
rep: GU075905.1__ADO99793.1__PHM2_015__00015__D35-99
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF11246.15 best | Phage_gp53 | 24.1 | 3.60e-05 | 94.3% | 25.5% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4b8vA01 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.83 | 55.0 | 5.65e-01 | 84.3% | 71.6% |
| 5c8qB02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.83 | 53.0 | 6.36e-01 | 82.9% | 100.0% |
| 2djpA00 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.80 | 56.0 | 5.42e-01 | 88.6% | 66.2% |
| 4b8vA03 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.79 | 53.0 | 6.13e-01 | 84.3% | 98.0% |
| 2mtzA01 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.76 | 51.0 | 5.83e-01 | 90.0% | 98.0% |
| 1e0gA00 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.73 | 47.0 | 5.34e-01 | 84.3% | 95.8% |
| 4bopB00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.66 | 45.0 | 3.46e-01 | 70.0% | 46.7% |
| 3tmpA01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.65 | 44.0 | 3.38e-01 | 70.0% | 46.7% |
| 4bouA00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.64 | 43.0 | 3.40e-01 | 70.0% | 50.4% |
| 2gu1A01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 43.0 | 4.02e-01 | 82.9% | 59.1% |
| 7csxA02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.61 | 42.0 | 4.18e-01 | 88.6% | 69.4% |
| 2cphA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 40.0 | 3.88e-01 | 82.9% | 60.8% |
| 2cpjA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 43.0 | 3.87e-01 | 100.0% | 56.6% |
| 6dx5A00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.58 | 44.0 | 3.26e-01 | 80.0% | 66.3% |
| 3sluB01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 41.0 | 3.77e-01 | 87.1% | 59.3% |
| 1wdvA00 | 3.90.960.10 | Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain | 0.51 | 41.0 | 3.32e-01 | 92.9% | 84.0% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5004560 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 63.0 | 7.09e-01 | 84.3% | 92.7% |
| 3903953 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.87 | 58.0 | 6.81e-01 | 87.1% | 96.0% |
| 3955076 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.87 | 55.0 | 6.74e-01 | 75.7% | 100.0% |
| 4177991 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.86 | 60.0 | 6.73e-01 | 85.7% | 92.7% |
| 4995817 | 101.15.1.4 ↗ | alpha arrays › HTH › LysM domain › LysM domain › Phage_gp53 | 0.85 | 65.0 | 6.55e-01 | 87.1% | 80.0% |
| 3587382 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 61.0 | 6.80e-01 | 85.7% | 94.5% |
| 3331840 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 58.0 | 6.53e-01 | 87.1% | 90.9% |
| 3846469 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.84 | 57.0 | 5.21e-01 | 85.7% | 54.4% |
| 3979943 | 101.15.1.3 ↗ | alpha arrays › HTH › LysM domain › LysM domain › Phage_tail_X | 0.84 | 56.0 | 6.57e-01 | 78.6% | 96.0% |
| 3925474 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.84 | 57.0 | 6.54e-01 | 87.1% | 98.0% |
| 3413357 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.83 | 59.0 | 5.97e-01 | 92.9% | 74.3% |
| 3898121 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.83 | 58.0 | 6.48e-01 | 91.4% | 92.7% |
| 3250125 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.83 | 59.0 | 6.13e-01 | 87.1% | 80.0% |
| 1758716 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.82 | 56.0 | 6.39e-01 | 85.7% | 94.2% |
| 3517460 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.82 | 56.0 | 6.24e-01 | 87.1% | 90.9% |
| 3413453 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.81 | 55.0 | 6.36e-01 | 87.1% | 98.0% |
| 2074716 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.81 | 54.0 | 6.22e-01 | 84.3% | 94.1% |
| 4448562 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.81 | 53.0 | 5.90e-01 | 84.3% | 85.5% |
| 1832368 | 101.15.1.4 ↗ | alpha arrays › HTH › LysM domain › LysM domain › Phage_gp53 | 0.81 | 74.0 | 5.30e-01 | 100.0% | 72.5% |
| 2809236 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.81 | 57.0 | 6.09e-01 | 82.9% | 83.9% |
| 162111 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.80 | 56.0 | 5.42e-01 | 88.6% | 66.2% |
| 4128043 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.78 | 49.0 | 5.85e-01 | 80.0% | 100.0% |
| 3636417 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.77 | 53.0 | 5.94e-01 | 84.3% | 94.3% |
| 2124917 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.76 | 58.0 | 4.31e-01 | 92.9% | 34.8% |
| 2895417 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.76 | 54.0 | 5.28e-01 | 85.7% | 68.8% |
| 4491522 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.75 | 52.0 | 5.56e-01 | 88.6% | 85.0% |
| 3381619 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.74 | 58.0 | 3.74e-01 | 92.9% | 19.8% |
| 3421938 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.73 | 45.0 | 4.86e-01 | 92.9% | 73.3% |
| 4069716 | 101.15.1.14 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM, LysM2_CERK1_LYK3_4_5 | 0.73 | 56.0 | 4.62e-01 | 94.3% | 47.5% |
| 3166029 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.73 | 52.0 | 5.68e-01 | 87.1% | 96.4% |
| 3963519 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.72 | 51.0 | 5.28e-01 | 82.9% | 80.0% |
| 3819870 | 101.15.1.6 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 | 0.71 | 55.0 | 4.39e-01 | 92.9% | 43.0% |
| 3821115 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.71 | 57.0 | 5.29e-01 | 94.3% | 70.6% |
| 3421939 | 101.15.1.9 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_CERK1_LYK3_4_5 | 0.70 | 55.0 | 4.45e-01 | 94.3% | 46.4% |
| 3611431 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.70 | 50.0 | 5.38e-01 | 82.9% | 88.3% |
| 3417561 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.69 | 61.0 | 3.92e-01 | 95.7% | 63.7% |
| 3365578 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.65 | 56.0 | 5.39e-01 | 98.6% | 81.2% |
| 3647286 | 101.15.1.7 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM_RLK | 0.65 | 51.0 | 5.05e-01 | 98.6% | 81.3% |
| 3641672 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.62 | 56.0 | 5.51e-01 | 98.6% | 92.0% |
| 3164516 | 101.15.1.2 ↗ | alpha arrays › HTH › LysM domain › LysM domain › OapA | 0.59 | 40.0 | 3.86e-01 | 85.7% | 58.8% |
| 5016168 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.59 | 44.0 | 4.27e-01 | 81.4% | 81.2% |
| 3386481 | 3953.1.1.0 ↗ | a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain | 0.58 | 41.0 | 3.72e-01 | 85.7% | 53.0% |
| 3990074 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.56 | 38.0 | 3.41e-01 | 85.7% | 46.7% |
| 3968453 | 3953.1.1.2 ↗ | a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3_N2 | 0.56 | 39.0 | 3.37e-01 | 84.3% | 43.3% |
| 1512999 | 3953.1.1.0 ↗ | a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain | 0.55 | 39.0 | 3.59e-01 | 87.1% | 53.5% |
| 3706605 | 101.1.2.119 ↗ | alpha arrays › HTH › HTH › winged helix domain › Tau95 | 0.53 | 40.0 | 2.85e-01 | 87.1% | 34.1% |
D2
medium
residues 91-159
Domain cluster:
rep: IMGVR_UViG_3300005606_000185-3300005606-Ga0066835_100019045__D107-158